Gene annotation
Transcriptome id Sobic.009G120200.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6P7Y4
Pfam PF12734
Panther DB PTHR31568 PTHR31568:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04080 : -
RAP-DB (Rice) LOC_Os05g31470.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
2 Sobic.005G221000 hypothetical protein -
3 Sobic.003G315500 adhesive/proline-rich protein, putative, expressed -
4 Sobic.001G150650 - -
5 Sobic.006G100332 - -
6 Sobic.010G212350 - -
7 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -
8 Sobic.003G087200 nuclease PA3, putative, expressed -
9 Sobic.002G210800 hypothetical protein -
10 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
11 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
12 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
13 Sobic.003G303300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K14454: aspartate aminotransferase, cytoplasmic
14 Sobic.001G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
15 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
16 Sobic.001G305800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain containing protein, expressed -
17 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
18 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
19 Sobic.002G420700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
20 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase


Gene co-expression network
sample Sobic009G120200 Sobic009G120200 Sobic001G150600 Sobic001G150600 Sobic009G120200--Sobic001G150600 Sobic005G221000 Sobic005G221000 Sobic009G120200--Sobic005G221000 Sobic003G315500 Sobic003G315500 Sobic009G120200--Sobic003G315500 Sobic001G150650 Sobic001G150650 Sobic009G120200--Sobic001G150650 Sobic006G100332 Sobic006G100332 Sobic009G120200--Sobic006G100332 Sobic010G212350 Sobic010G212350 Sobic009G120200--Sobic010G212350 Sobic004G255000 Sobic004G255000 Sobic009G120200--Sobic004G255000 Sobic003G087200 Sobic003G087200 Sobic009G120200--Sobic003G087200 Sobic002G210800 Sobic002G210800 Sobic009G120200--Sobic002G210800 Sobic001G150600--Sobic003G087200 Sobic001G150600--Sobic006G100332 Sobic008G153400 Sobic008G153400 Sobic001G150600--Sobic008G153400 Sobic006G030700 Sobic006G030700 Sobic001G150600--Sobic006G030700 Sobic009G226300 Sobic009G226300 Sobic001G150600--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic001G150600--Sobic003G148800 Sobic001G325200 Sobic001G325200 Sobic001G150600--Sobic001G325200 Sobic009G054500 Sobic009G054500 Sobic001G150600--Sobic009G054500 Sobic004G321800 Sobic004G321800 Sobic001G150600--Sobic004G321800 Sobic005G221000--Sobic002G210800 Sobic005G221000--Sobic010G212350 Sobic007G034000 Sobic007G034000 Sobic005G221000--Sobic007G034000 Sobic001G069900 Sobic001G069900 Sobic005G221000--Sobic001G069900 Sobic006G181300 Sobic006G181300 Sobic005G221000--Sobic006G181300 Sobic005G221000--Sobic003G315500 Sobic005G221000--Sobic009G120200 Sobic001G316400 Sobic001G316400 Sobic005G221000--Sobic001G316400 Sobic005G221000--Sobic001G150650 Sobic003G315500--Sobic002G210800 Sobic003G315500--Sobic005G221000 Sobic003G315500--Sobic001G150650 Sobic003G315500--Sobic009G120200 Sobic003G315500--Sobic003G087200 Sobic003G315500--Sobic001G150600 Sobic002G265700 Sobic002G265700 Sobic003G315500--Sobic002G265700 Sobic003G315500--Sobic006G100332 Sobic003G315500--Sobic010G212350 Sobic001G150650--Sobic001G150600 Sobic001G150650--Sobic004G255000 Sobic001G150650--Sobic003G087200 Sobic001G150650--Sobic006G100332 Sobic009G029600 Sobic009G029600 Sobic001G150650--Sobic009G029600 Sobic001G150650--Sobic008G153400 Sobic002G085300 Sobic002G085300 Sobic001G150650--Sobic002G085300 Sobic001G162700 Sobic001G162700 Sobic001G150650--Sobic001G162700 Sobic003G259200 Sobic003G259200 Sobic001G150650--Sobic003G259200 Sobic006G100332--Sobic001G150600 Sobic006G100332--Sobic003G087200 Sobic006G100332--Sobic009G226300 Sobic006G100332--Sobic009G054500 Sobic006G100332--Sobic004G321800 Sobic007G187300 Sobic007G187300 Sobic006G100332--Sobic007G187300 Sobic006G100332--Sobic006G030700 Sobic001G249300 Sobic001G249300 Sobic006G100332--Sobic001G249300 Sobic006G100332--Sobic003G148800 Sobic010G212350--Sobic005G221000 Sobic010G212350--Sobic002G210800 Sobic004G058300 Sobic004G058300 Sobic010G212350--Sobic004G058300 Sobic006G082000 Sobic006G082000 Sobic010G212350--Sobic006G082000 Sobic010G212350--Sobic009G120200 Sobic004G106900 Sobic004G106900 Sobic010G212350--Sobic004G106900 Sobic008G074400 Sobic008G074400 Sobic010G212350--Sobic008G074400 Sobic010G212350--Sobic001G069900 Sobic010G212350--Sobic003G315500 Sobic004G255000--Sobic009G029600 Sobic005G018500 Sobic005G018500 Sobic004G255000--Sobic005G018500 Sobic004G255000--Sobic001G249300 Sobic004G255000--Sobic009G054500 Sobic001G280200 Sobic001G280200 Sobic004G255000--Sobic001G280200 Sobic004G255000--Sobic003G259200 Sobic004G260000 Sobic004G260000 Sobic004G255000--Sobic004G260000 Sobic003G219600 Sobic003G219600 Sobic004G255000--Sobic003G219600 Sobic005G152100 Sobic005G152100 Sobic004G255000--Sobic005G152100 Sobic003G087200--Sobic001G150600 Sobic003G087200--Sobic006G100332 Sobic003G087200--Sobic004G321800 Sobic003G087200--Sobic006G030700 Sobic003G087200--Sobic009G226300 Sobic006G091700 Sobic006G091700 Sobic003G087200--Sobic006G091700 Sobic003G087200--Sobic003G148800 Sobic003G087200--Sobic008G153400 Sobic009G114000 Sobic009G114000 Sobic003G087200--Sobic009G114000 Sobic002G210800--Sobic005G221000 Sobic002G210800--Sobic007G034000 Sobic002G210800--Sobic010G212350 Sobic002G210800--Sobic003G315500 Sobic002G210800--Sobic001G069900 Sobic004G162400 Sobic004G162400 Sobic002G210800--Sobic004G162400 Sobic002G210800--Sobic009G120200 Sobic009G161000 Sobic009G161000 Sobic002G210800--Sobic009G161000 Sobic005G178100 Sobic005G178100 Sobic002G210800--Sobic005G178100
Octagon: transcription factors


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