Gene annotation
Transcriptome id Sobic.009G151400.2,Sobic.009G151400.1
Synonym SbZNF1, Sb09g021530
Functional annotation "Capable of trans-activating SbMATE promoter alleles harboring one, four, and five copies of the MITE repeats " (PubMedID : 30545913)
zinc finger DHHC domain-containing protein, putative, expressed
UniProt C5YYP5 , A0A1Z5R2S9
Pfam PF01529
Panther DB PTHR22883 PTHR22883:SF41
NCBI CDD KOG1311; DHHC-type Zn-finger proteins
KEGG Orthology K16675; palmitoyltransferase ZDHHC9/14/18
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G24630 : DHHC-type zinc finger family protein
RAP-DB (Rice) LOC_Os05g36090.1 : zinc finger DHHC domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a043852
Brachypodium KQK06063
Barley HORVU1Hr1G074890.3 , HORVU1Hr1G074890.2 , HORVU1Hr1G074890.1
Wheat TraesCS1B02G282200 , TraesCS1B02G282200 , TraesCS1D02G272700 , TraesCS1D02G272700 , TraesCS1A02G272200 , TraesCS1A02G272200
Populus -


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cDNA sequences
Sobic.009G151400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G140300 delta14-sterol reductase, putative, expressed K00213: 7-dehydrocholesterol reductase
2 Sobic.007G219200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
3 Sobic.003G165800 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed K02563: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
4 Sobic.004G006700 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.002G428900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MRH1, putative, expressed -
6 Sobic.010G224900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
7 Sobic.003G400600 BHLH transcription factor, putative, expressed -
8 Sobic.010G123300 expressed protein -
9 Sobic.001G389500 guanylate kinase, putative, expressed K00942: E2.7.4.8, guanylate kinase
10 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
11 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
12 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
13 Sobic.002G317600 endoribonuclease, putative, expressed -
14 Sobic.001G215500 expressed protein -
15 Sobic.009G055900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
16 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
17 Sobic.001G021500 CESA5 - cellulose synthase, expressed K10999: cellulose synthase A
18 Sobic.001G157100 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
19 Sobic.001G371700 zinc finger protein, putative, expressed -
20 Sobic.004G260400 expressed protein K07018: uncharacterized protein


Gene co-expression network
sample Sobic009G151400 Sobic009G151400 Sobic004G140300 Sobic004G140300 Sobic009G151400--Sobic004G140300 Sobic007G219200 Sobic007G219200 Sobic009G151400--Sobic007G219200 Sobic003G165800 Sobic003G165800 Sobic009G151400--Sobic003G165800 Sobic004G006700 Sobic004G006700 Sobic009G151400--Sobic004G006700 Sobic002G428900 Sobic002G428900 Sobic009G151400--Sobic002G428900 Sobic010G224900 Sobic010G224900 Sobic009G151400--Sobic010G224900 Sobic003G400600 Sobic003G400600 Sobic009G151400--Sobic003G400600 Sobic010G123300 Sobic010G123300 Sobic009G151400--Sobic010G123300 Sobic001G389500 Sobic001G389500 Sobic009G151400--Sobic001G389500 Sobic009G151800 Sobic009G151800 Sobic004G140300--Sobic009G151800 Sobic004G140300--Sobic009G151400 Sobic002G317600 Sobic002G317600 Sobic004G140300--Sobic002G317600 Sobic002G264300 Sobic002G264300 Sobic004G140300--Sobic002G264300 Sobic004G184000 Sobic004G184000 Sobic004G140300--Sobic004G184000 Sobic003G182400 Sobic003G182400 Sobic004G140300--Sobic003G182400 Sobic008G083400 Sobic008G083400 Sobic004G140300--Sobic008G083400 Sobic003G420900 Sobic003G420900 Sobic004G140300--Sobic003G420900 Sobic004G140300--Sobic002G428900 Sobic002G219900 Sobic002G219900 Sobic007G219200--Sobic002G219900 Sobic001G115500 Sobic001G115500 Sobic007G219200--Sobic001G115500 Sobic003G027800 Sobic003G027800 Sobic007G219200--Sobic003G027800 Sobic004G249300 Sobic004G249300 Sobic007G219200--Sobic004G249300 Sobic003G077500 Sobic003G077500 Sobic007G219200--Sobic003G077500 Sobic008G125000 Sobic008G125000 Sobic007G219200--Sobic008G125000 Sobic001G435201 Sobic001G435201 Sobic007G219200--Sobic001G435201 Sobic001G382400 Sobic001G382400 Sobic007G219200--Sobic001G382400 Sobic002G394800 Sobic002G394800 Sobic007G219200--Sobic002G394800 Sobic001G104300 Sobic001G104300 Sobic003G165800--Sobic001G104300 Sobic002G141900 Sobic002G141900 Sobic003G165800--Sobic002G141900 Sobic003G165800--Sobic003G420900 Sobic001G021500 Sobic001G021500 Sobic003G165800--Sobic001G021500 Sobic001G441200 Sobic001G441200 Sobic003G165800--Sobic001G441200 Sobic006G281066 Sobic006G281066 Sobic003G165800--Sobic006G281066 Sobic005G022000 Sobic005G022000 Sobic003G165800--Sobic005G022000 Sobic009G055900 Sobic009G055900 Sobic003G165800--Sobic009G055900 Sobic002G363500 Sobic002G363500 Sobic003G165800--Sobic002G363500 Sobic004G134100 Sobic004G134100 Sobic004G006700--Sobic004G134100 Sobic004G006700--Sobic010G224900 Sobic001G069800 Sobic001G069800 Sobic004G006700--Sobic001G069800 Sobic001G215500 Sobic001G215500 Sobic004G006700--Sobic001G215500 Sobic009G026200 Sobic009G026200 Sobic004G006700--Sobic009G026200 Sobic002G427300 Sobic002G427300 Sobic004G006700--Sobic002G427300 Sobic004G051300 Sobic004G051300 Sobic004G006700--Sobic004G051300 Sobic009G123500 Sobic009G123500 Sobic004G006700--Sobic009G123500 Sobic002G393200 Sobic002G393200 Sobic004G006700--Sobic002G393200 Sobic002G388600 Sobic002G388600 Sobic002G428900--Sobic002G388600 Sobic003G122100 Sobic003G122100 Sobic002G428900--Sobic003G122100 Sobic002G428900--Sobic005G022000 Sobic002G428900--Sobic004G140300 Sobic010G059200 Sobic010G059200 Sobic002G428900--Sobic010G059200 Sobic002G428900--Sobic009G151400 Sobic001G408800 Sobic001G408800 Sobic002G428900--Sobic001G408800 Sobic004G296800 Sobic004G296800 Sobic002G428900--Sobic004G296800 Sobic002G428900--Sobic003G165800 Sobic003G151300 Sobic003G151300 Sobic010G224900--Sobic003G151300 Sobic001G107200 Sobic001G107200 Sobic010G224900--Sobic001G107200 Sobic010G224900--Sobic004G006700 Sobic010G224900--Sobic009G026200 Sobic005G211200 Sobic005G211200 Sobic010G224900--Sobic005G211200 Sobic002G348000 Sobic002G348000 Sobic010G224900--Sobic002G348000 Sobic010G224900--Sobic001G215500 Sobic003G128000 Sobic003G128000 Sobic010G224900--Sobic003G128000 Sobic010G224900--Sobic001G069800 Sobic001G451800 Sobic001G451800 Sobic003G400600--Sobic001G451800 Sobic003G277200 Sobic003G277200 Sobic003G400600--Sobic003G277200 Sobic001G437500 Sobic001G437500 Sobic003G400600--Sobic001G437500 Sobic008G039800 Sobic008G039800 Sobic003G400600--Sobic008G039800 Sobic002G142500 Sobic002G142500 Sobic003G400600--Sobic002G142500 Sobic002G276600 Sobic002G276600 Sobic003G400600--Sobic002G276600 Sobic003G017500 Sobic003G017500 Sobic003G400600--Sobic003G017500 Sobic002G246000 Sobic002G246000 Sobic003G400600--Sobic002G246000 Sobic002G045200 Sobic002G045200 Sobic003G400600--Sobic002G045200 Sobic010G123300--Sobic001G021500 Sobic010G123300--Sobic003G165800 Sobic010G123300--Sobic010G059200 Sobic010G123300--Sobic009G055900 Sobic002G118700 Sobic002G118700 Sobic010G123300--Sobic002G118700 Sobic004G203900 Sobic004G203900 Sobic010G123300--Sobic004G203900 Sobic007G050600 Sobic007G050600 Sobic010G123300--Sobic007G050600 Sobic010G050900 Sobic010G050900 Sobic010G123300--Sobic010G050900 Sobic010G123300--Sobic004G296800 Sobic001G389500--Sobic005G022000 Sobic001G389500--Sobic002G363500 Sobic001G099800 Sobic001G099800 Sobic001G389500--Sobic001G099800 Sobic002G190800 Sobic002G190800 Sobic001G389500--Sobic002G190800 Sobic001G172300 Sobic001G172300 Sobic001G389500--Sobic001G172300 Sobic007G026200 Sobic007G026200 Sobic001G389500--Sobic007G026200 Sobic001G395300 Sobic001G395300 Sobic001G389500--Sobic001G395300 Sobic010G012900 Sobic010G012900 Sobic001G389500--Sobic010G012900 Sobic003G425100 Sobic003G425100 Sobic001G389500--Sobic003G425100
Octagon: transcription factors


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