Gene annotation
Transcriptome id Sobic.010G050300.3,Sobic.010G050300.4,Sobic.010G050300.2
Synonym CCD1, ATCCD1, Sb10g004360, ATNCED1, NCED1
Functional annotation carotenoid cleavage dioxygenase, putative, expressed
UniProt A0A194YHD3 , A0A1W0VRK3 , A0A1W0VRJ1
Pfam PF03055
Panther DB PTHR10543 PTHR10543:SF30
NCBI CDD KOG1285; Beta, beta-carotene 15,15'-dioxygenase and related enzymes
KEGG Orthology K11159; carotenoid cleavage oxygenase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G63520 : carotenoid cleavage dioxygenase 1
RAP-DB (Rice) LOC_Os08g28240.1 : carotenoid cleavage dioxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a049938
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G062000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
2 Sobic.006G199100 pathogenesis-related Bet v I family protein, putative, expressed -
3 Sobic.002G185500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter, putative, expressed -
4 Sobic.010G151801 - -
5 Sobic.009G110400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@RING-H2 finger protein, putative, expressed -
6 Sobic.009G016300 ZOS5-02 - C2H2 zinc finger protein, expressed -
7 Sobic.003G184100 auxin-induced protein 5NG4, putative, expressed -
8 Sobic.003G011600 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed K00606: 3-methyl-2-oxobutanoate hydroxymethyltransferase
9 Sobic.006G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.002G375400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
11 Sobic.009G254900 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
12 Sobic.007G215900 OsWAK73 - OsWAK receptor-like protein kinase, expressed -
13 Sobic.002G101900 - -
14 Sobic.004G334400 ANTH, putative, expressed -
15 Sobic.004G316500 tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
16 Sobic.004G348400 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
17 Sobic.003G368600 terpene synthase, putative, expressed -
18 Sobic.005G092900 - -
19 Sobic.003G088500 multicopper oxidase domain containing protein, expressed -
20 Sobic.002G329100 TKL_IRAK_DUF26-ld.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -


Gene co-expression network
sample Sobic010G050300 Sobic010G050300 Sobic004G062000 Sobic004G062000 Sobic010G050300--Sobic004G062000 Sobic006G199100 Sobic006G199100 Sobic010G050300--Sobic006G199100 Sobic002G185500 Sobic002G185500 Sobic010G050300--Sobic002G185500 Sobic010G151801 Sobic010G151801 Sobic010G050300--Sobic010G151801 Sobic009G110400 Sobic009G110400 Sobic010G050300--Sobic009G110400 Sobic009G016300 Sobic009G016300 Sobic010G050300--Sobic009G016300 Sobic003G184100 Sobic003G184100 Sobic010G050300--Sobic003G184100 Sobic003G011600 Sobic003G011600 Sobic010G050300--Sobic003G011600 Sobic006G243600 Sobic006G243600 Sobic010G050300--Sobic006G243600 Sobic004G062000--Sobic010G050300 Sobic004G152900 Sobic004G152900 Sobic004G062000--Sobic004G152900 Sobic005G053800 Sobic005G053800 Sobic004G062000--Sobic005G053800 Sobic007G094050 Sobic007G094050 Sobic004G062000--Sobic007G094050 Sobic004G337925 Sobic004G337925 Sobic004G062000--Sobic004G337925 Sobic006G259700 Sobic006G259700 Sobic004G062000--Sobic006G259700 Sobic003G149100 Sobic003G149100 Sobic004G062000--Sobic003G149100 Sobic006G030800 Sobic006G030800 Sobic004G062000--Sobic006G030800 Sobic002G422500 Sobic002G422500 Sobic004G062000--Sobic002G422500 Sobic001G400700 Sobic001G400700 Sobic006G199100--Sobic001G400700 Sobic003G129000 Sobic003G129000 Sobic006G199100--Sobic003G129000 Sobic007G141500 Sobic007G141500 Sobic006G199100--Sobic007G141500 Sobic009G043600 Sobic009G043600 Sobic006G199100--Sobic009G043600 Sobic005G092900 Sobic005G092900 Sobic006G199100--Sobic005G092900 Sobic009G120000 Sobic009G120000 Sobic006G199100--Sobic009G120000 Sobic001G444400 Sobic001G444400 Sobic006G199100--Sobic001G444400 Sobic003G426300 Sobic003G426300 Sobic006G199100--Sobic003G426300 Sobic005G101800 Sobic005G101800 Sobic006G199100--Sobic005G101800 Sobic006G068800 Sobic006G068800 Sobic002G185500--Sobic006G068800 Sobic001G238300 Sobic001G238300 Sobic002G185500--Sobic001G238300 Sobic005G073000 Sobic005G073000 Sobic002G185500--Sobic005G073000 Sobic010G194100 Sobic010G194100 Sobic002G185500--Sobic010G194100 Sobic002G261500 Sobic002G261500 Sobic002G185500--Sobic002G261500 Sobic006G172601 Sobic006G172601 Sobic002G185500--Sobic006G172601 Sobic004G297900 Sobic004G297900 Sobic002G185500--Sobic004G297900 Sobic003G417100 Sobic003G417100 Sobic002G185500--Sobic003G417100 Sobic006G274933 Sobic006G274933 Sobic002G185500--Sobic006G274933 Sobic005G071100 Sobic005G071100 Sobic010G151801--Sobic005G071100 Sobic005G224000 Sobic005G224000 Sobic010G151801--Sobic005G224000 Sobic005G110451 Sobic005G110451 Sobic010G151801--Sobic005G110451 Sobic005G110454 Sobic005G110454 Sobic010G151801--Sobic005G110454 Sobic006G218300 Sobic006G218300 Sobic010G151801--Sobic006G218300 Sobic001G066000 Sobic001G066000 Sobic010G151801--Sobic001G066000 Sobic002G004800 Sobic002G004800 Sobic010G151801--Sobic002G004800 Sobic001G195300 Sobic001G195300 Sobic010G151801--Sobic001G195300 Sobic001G401000 Sobic001G401000 Sobic010G151801--Sobic001G401000 Sobic002G415100 Sobic002G415100 Sobic009G110400--Sobic002G415100 Sobic003G426100 Sobic003G426100 Sobic009G110400--Sobic003G426100 Sobic010G239300 Sobic010G239300 Sobic009G110400--Sobic010G239300 Sobic003G240600 Sobic003G240600 Sobic009G110400--Sobic003G240600 Sobic009G128700 Sobic009G128700 Sobic009G110400--Sobic009G128700 Sobic002G195400 Sobic002G195400 Sobic009G110400--Sobic002G195400 Sobic001G317200 Sobic001G317200 Sobic009G110400--Sobic001G317200 Sobic007G066932 Sobic007G066932 Sobic009G110400--Sobic007G066932 Sobic004G304300 Sobic004G304300 Sobic009G110400--Sobic004G304300 Sobic001G449600 Sobic001G449600 Sobic009G016300--Sobic001G449600 Sobic006G199800 Sobic006G199800 Sobic009G016300--Sobic006G199800 Sobic003G255500 Sobic003G255500 Sobic009G016300--Sobic003G255500 Sobic003G062600 Sobic003G062600 Sobic009G016300--Sobic003G062600 Sobic003G255200 Sobic003G255200 Sobic009G016300--Sobic003G255200 Sobic004G217800 Sobic004G217800 Sobic009G016300--Sobic004G217800 Sobic003G437200 Sobic003G437200 Sobic009G016300--Sobic003G437200 Sobic009G217700 Sobic009G217700 Sobic009G016300--Sobic009G217700 Sobic003G417800 Sobic003G417800 Sobic009G016300--Sobic003G417800 Sobic003G157600 Sobic003G157600 Sobic003G184100--Sobic003G157600 Sobic004G202400 Sobic004G202400 Sobic003G184100--Sobic004G202400 Sobic006G044100 Sobic006G044100 Sobic003G184100--Sobic006G044100 Sobic006G197100 Sobic006G197100 Sobic003G184100--Sobic006G197100 Sobic001G416200 Sobic001G416200 Sobic003G184100--Sobic001G416200 Sobic004G046200 Sobic004G046200 Sobic003G184100--Sobic004G046200 Sobic004G042000 Sobic004G042000 Sobic003G184100--Sobic004G042000 Sobic004G349125 Sobic004G349125 Sobic003G184100--Sobic004G349125 Sobic001G481400 Sobic001G481400 Sobic003G184100--Sobic001G481400 Sobic004G348400 Sobic004G348400 Sobic003G011600--Sobic004G348400 Sobic003G368600 Sobic003G368600 Sobic003G011600--Sobic003G368600 Sobic003G011600--Sobic006G044100 Sobic001G082600 Sobic001G082600 Sobic003G011600--Sobic001G082600 Sobic004G176600 Sobic004G176600 Sobic003G011600--Sobic004G176600 Sobic003G011600--Sobic004G046200 Sobic003G079400 Sobic003G079400 Sobic003G011600--Sobic003G079400 Sobic003G011600--Sobic006G197100 Sobic003G011600--Sobic003G255500 Sobic006G243600--Sobic003G368600 Sobic006G243600--Sobic004G348400 Sobic009G240600 Sobic009G240600 Sobic006G243600--Sobic009G240600 Sobic007G151300 Sobic007G151300 Sobic006G243600--Sobic007G151300 Sobic002G247600 Sobic002G247600 Sobic006G243600--Sobic002G247600 Sobic009G072900 Sobic009G072900 Sobic006G243600--Sobic009G072900 Sobic001G147900 Sobic001G147900 Sobic006G243600--Sobic001G147900 Sobic010G185000 Sobic010G185000 Sobic006G243600--Sobic010G185000 Sobic010G008400 Sobic010G008400 Sobic006G243600--Sobic010G008400
Octagon: transcription factors


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