Gene annotation
Transcriptome id Sobic.009G110400.1
Synonym Sb09g017880
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
RING-H2 finger protein, putative, expressed
UniProt A0A1Z5R314
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF147
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G40070 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g29676.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a036964 , Zm00025a043373 , Zm00025a043374
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G415100 POEI50 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
2 Sobic.003G426100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
3 Sobic.010G239300 oryzain beta chain precursor, putative, expressed -
4 Sobic.003G240600 VQ domain containing protein, putative, expressed -
5 Sobic.009G128700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
6 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
7 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.007G066932 - -
9 Sobic.004G304300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K15095: (+)-neomenthol dehydrogenase
10 Sobic.007G135201 - -
11 Sobic.002G034800 - -
12 Sobic.001G453100 homocysteine S-methyltransferase protein, putative, expressed K00547: mmuM, homocysteine S-methyltransferase
13 Sobic.002G057900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed K03671: thioredoxin 1
14 Sobic.009G153100 zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
15 Sobic.003G252800 hypothetical protein -
16 Sobic.004G088551 - -
17 Sobic.007G025500 amino acid transporter, putative, expressed -
18 Sobic.004G216600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsGrx_C2.1 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
19 Sobic.007G067600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
20 Sobic.004G107700 expressed protein -


Gene co-expression network
sample Sobic009G110400 Sobic009G110400 Sobic002G415100 Sobic002G415100 Sobic009G110400--Sobic002G415100 Sobic003G426100 Sobic003G426100 Sobic009G110400--Sobic003G426100 Sobic010G239300 Sobic010G239300 Sobic009G110400--Sobic010G239300 Sobic003G240600 Sobic003G240600 Sobic009G110400--Sobic003G240600 Sobic009G128700 Sobic009G128700 Sobic009G110400--Sobic009G128700 Sobic002G195400 Sobic002G195400 Sobic009G110400--Sobic002G195400 Sobic001G317200 Sobic001G317200 Sobic009G110400--Sobic001G317200 Sobic007G066932 Sobic007G066932 Sobic009G110400--Sobic007G066932 Sobic004G304300 Sobic004G304300 Sobic009G110400--Sobic004G304300 Sobic002G415100--Sobic010G239300 Sobic003G280200 Sobic003G280200 Sobic002G415100--Sobic003G280200 Sobic002G415100--Sobic009G128700 Sobic002G415100--Sobic001G317200 Sobic003G297600 Sobic003G297600 Sobic002G415100--Sobic003G297600 Sobic010G213700 Sobic010G213700 Sobic002G415100--Sobic010G213700 Sobic002G034800 Sobic002G034800 Sobic002G415100--Sobic002G034800 Sobic009G231000 Sobic009G231000 Sobic002G415100--Sobic009G231000 Sobic003G156200 Sobic003G156200 Sobic002G415100--Sobic003G156200 Sobic003G426100--Sobic007G066932 Sobic003G426100--Sobic002G195400 Sobic010G035700 Sobic010G035700 Sobic003G426100--Sobic010G035700 Sobic010G102300 Sobic010G102300 Sobic003G426100--Sobic010G102300 Sobic007G067350 Sobic007G067350 Sobic003G426100--Sobic007G067350 Sobic003G426100--Sobic004G304300 Sobic001G319700 Sobic001G319700 Sobic003G426100--Sobic001G319700 Sobic007G135201 Sobic007G135201 Sobic003G426100--Sobic007G135201 Sobic007G067600 Sobic007G067600 Sobic003G426100--Sobic007G067600 Sobic010G239300--Sobic002G415100 Sobic010G239300--Sobic001G317200 Sobic010G239300--Sobic009G128700 Sobic010G084400 Sobic010G084400 Sobic010G239300--Sobic010G084400 Sobic002G416600 Sobic002G416600 Sobic010G239300--Sobic002G416600 Sobic003G087300 Sobic003G087300 Sobic010G239300--Sobic003G087300 Sobic007G145600 Sobic007G145600 Sobic010G239300--Sobic007G145600 Sobic006G099900 Sobic006G099900 Sobic010G239300--Sobic006G099900 Sobic005G101800 Sobic005G101800 Sobic010G239300--Sobic005G101800 Sobic003G240600--Sobic001G317200 Sobic001G325000 Sobic001G325000 Sobic003G240600--Sobic001G325000 Sobic006G084600 Sobic006G084600 Sobic003G240600--Sobic006G084600 Sobic001G348700 Sobic001G348700 Sobic003G240600--Sobic001G348700 Sobic004G216600 Sobic004G216600 Sobic003G240600--Sobic004G216600 Sobic003G252800 Sobic003G252800 Sobic003G240600--Sobic003G252800 Sobic003G317100 Sobic003G317100 Sobic003G240600--Sobic003G317100 Sobic002G414600 Sobic002G414600 Sobic003G240600--Sobic002G414600 Sobic003G437200 Sobic003G437200 Sobic003G240600--Sobic003G437200 Sobic009G128700--Sobic010G084400 Sobic009G128700--Sobic003G252800 Sobic003G426300 Sobic003G426300 Sobic009G128700--Sobic003G426300 Sobic009G128700--Sobic005G101800 Sobic009G128700--Sobic010G239300 Sobic009G128700--Sobic002G415100 Sobic003G426000 Sobic003G426000 Sobic009G128700--Sobic003G426000 Sobic009G128700--Sobic006G099900 Sobic009G128700--Sobic003G280200 Sobic002G195400--Sobic007G067600 Sobic002G195400--Sobic001G319700 Sobic002G195400--Sobic003G426100 Sobic002G195400--Sobic007G066932 Sobic002G195400--Sobic010G102300 Sobic002G195400--Sobic003G426000 Sobic002G195400--Sobic007G067350 Sobic001G317000 Sobic001G317000 Sobic002G195400--Sobic001G317000 Sobic002G195400--Sobic004G304300 Sobic005G051200 Sobic005G051200 Sobic001G317200--Sobic005G051200 Sobic001G317200--Sobic006G099900 Sobic001G317200--Sobic003G252800 Sobic001G317200--Sobic010G084400 Sobic003G286600 Sobic003G286600 Sobic001G317200--Sobic003G286600 Sobic008G050600 Sobic008G050600 Sobic001G317200--Sobic008G050600 Sobic001G317200--Sobic003G240600 Sobic001G317200--Sobic005G101800 Sobic001G317200--Sobic002G416600 Sobic007G066932--Sobic007G067350 Sobic007G066932--Sobic003G426100 Sobic007G066932--Sobic002G195400 Sobic007G066932--Sobic010G102300 Sobic007G066932--Sobic007G067600 Sobic007G066932--Sobic004G304300 Sobic007G066932--Sobic001G319700 Sobic007G066932--Sobic006G084600 Sobic007G066932--Sobic007G135201 Sobic004G304300--Sobic007G066932 Sobic004G304300--Sobic003G426100 Sobic004G304300--Sobic002G195400 Sobic004G304300--Sobic003G426000 Sobic004G304300--Sobic010G102300 Sobic004G304300--Sobic007G067350 Sobic004G304300--Sobic001G319700 Sobic004G304300--Sobic005G101800 Sobic004G304300--Sobic009G128700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.