Gene annotation
Transcriptome id Sobic.010G063900.1
Synonym Sb10g005520
Functional annotation AP2 domain containing protein, expressed
UniProt C5Z5G9
Pfam PF00847
Panther DB PTHR31194 PTHR31194:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G25190 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os06g08340.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049794
Brachypodium KQK19294
Barley HORVU7Hr1G029870.1 , HORVU7Hr1G029870.3 , HORVU7Hr1G029870.2 , HORVU7Hr1G029870.5 , HORVU7Hr1G029870.4
Wheat TraesCS7D02G147200 , TraesCS7A02G145800 , TraesCS7D02G147100 , TraesCS6D02G343800 , TraesCS7B02G048100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G085800 cytokinin-N-glucosyltransferase 1, putative, expressed -
2 Sobic.009G098000 expressed protein -
3 Sobic.003G176300 - -
4 Sobic.010G066800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
5 Sobic.010G241800 - -
6 Sobic.003G426500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.002G068000 expressed protein -
8 Sobic.005G216700 plant protein of unknown function domain containing protein, expressed -
9 Sobic.003G182200 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed -
10 Sobic.010G158400 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.009G259800 zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
12 Sobic.009G032900 peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.003G185300 dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
14 Sobic.007G192000 ACR5, putative, expressed -
15 Sobic.005G052700 ZOS11-01 - C2H2 zinc finger protein, expressed -
16 Sobic.007G100700 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
17 Sobic.003G349400 expressed protein -
18 Sobic.003G426200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.010G241700 - -
20 Sobic.008G145900 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G063900 Sobic010G063900 Sobic002G085800 Sobic002G085800 Sobic010G063900--Sobic002G085800 Sobic009G098000 Sobic009G098000 Sobic010G063900--Sobic009G098000 Sobic003G176300 Sobic003G176300 Sobic010G063900--Sobic003G176300 Sobic010G066800 Sobic010G066800 Sobic010G063900--Sobic010G066800 Sobic010G241800 Sobic010G241800 Sobic010G063900--Sobic010G241800 Sobic003G426500 Sobic003G426500 Sobic010G063900--Sobic003G426500 Sobic002G068000 Sobic002G068000 Sobic010G063900--Sobic002G068000 Sobic005G216700 Sobic005G216700 Sobic010G063900--Sobic005G216700 Sobic003G182200 Sobic003G182200 Sobic010G063900--Sobic003G182200 Sobic003G349400 Sobic003G349400 Sobic002G085800--Sobic003G349400 Sobic010G158400 Sobic010G158400 Sobic002G085800--Sobic010G158400 Sobic009G032900 Sobic009G032900 Sobic002G085800--Sobic009G032900 Sobic002G085800--Sobic005G216700 Sobic002G085800--Sobic002G068000 Sobic004G351200 Sobic004G351200 Sobic002G085800--Sobic004G351200 Sobic010G139100 Sobic010G139100 Sobic002G085800--Sobic010G139100 Sobic006G150100 Sobic006G150100 Sobic002G085800--Sobic006G150100 Sobic010G234500 Sobic010G234500 Sobic002G085800--Sobic010G234500 Sobic005G049350 Sobic005G049350 Sobic009G098000--Sobic005G049350 Sobic001G521600 Sobic001G521600 Sobic009G098000--Sobic001G521600 Sobic004G337950 Sobic004G337950 Sobic009G098000--Sobic004G337950 Sobic007G149000 Sobic007G149000 Sobic009G098000--Sobic007G149000 Sobic009G079200 Sobic009G079200 Sobic009G098000--Sobic009G079200 Sobic009G098000--Sobic003G176300 Sobic001G506100 Sobic001G506100 Sobic009G098000--Sobic001G506100 Sobic009G018300 Sobic009G018300 Sobic009G098000--Sobic009G018300 Sobic004G080300 Sobic004G080300 Sobic009G098000--Sobic004G080300 Sobic003G176300--Sobic005G049350 Sobic003G176300--Sobic001G521600 Sobic003G176300--Sobic007G149000 Sobic003G176300--Sobic005G216700 Sobic006G266800 Sobic006G266800 Sobic003G176300--Sobic006G266800 Sobic003G176300--Sobic009G079200 Sobic009G259800 Sobic009G259800 Sobic003G176300--Sobic009G259800 Sobic006G133200 Sobic006G133200 Sobic003G176300--Sobic006G133200 Sobic006G133300 Sobic006G133300 Sobic003G176300--Sobic006G133300 Sobic007G100700 Sobic007G100700 Sobic010G066800--Sobic007G100700 Sobic010G066800--Sobic003G426500 Sobic010G066800--Sobic003G349400 Sobic010G066800--Sobic002G068000 Sobic010G066800--Sobic003G182200 Sobic007G008600 Sobic007G008600 Sobic010G066800--Sobic007G008600 Sobic010G066800--Sobic009G032900 Sobic008G011700 Sobic008G011700 Sobic010G066800--Sobic008G011700 Sobic002G255000 Sobic002G255000 Sobic010G066800--Sobic002G255000 Sobic001G209300 Sobic001G209300 Sobic010G241800--Sobic001G209300 Sobic010G241800--Sobic003G182200 Sobic010G168400 Sobic010G168400 Sobic010G241800--Sobic010G168400 Sobic010G241800--Sobic007G100700 Sobic004G119800 Sobic004G119800 Sobic010G241800--Sobic004G119800 Sobic010G241800--Sobic003G426500 Sobic010G241800--Sobic002G068000 Sobic010G241800--Sobic008G011700 Sobic003G064800 Sobic003G064800 Sobic010G241800--Sobic003G064800 Sobic003G426500--Sobic007G100700 Sobic003G426500--Sobic003G182200 Sobic003G426500--Sobic008G011700 Sobic003G426500--Sobic010G066800 Sobic001G067100 Sobic001G067100 Sobic003G426500--Sobic001G067100 Sobic003G426500--Sobic002G068000 Sobic003G426500--Sobic009G259800 Sobic003G426500--Sobic010G158400 Sobic003G426500--Sobic003G349400 Sobic002G068000--Sobic009G032900 Sobic002G068000--Sobic003G349400 Sobic002G068000--Sobic010G158400 Sobic002G068000--Sobic010G234500 Sobic005G080600 Sobic005G080600 Sobic002G068000--Sobic005G080600 Sobic002G068000--Sobic009G259800 Sobic002G068000--Sobic003G426500 Sobic002G068000--Sobic005G216700 Sobic002G068000--Sobic010G066800 Sobic005G216700--Sobic004G351200 Sobic005G216700--Sobic009G032900 Sobic005G216700--Sobic010G139100 Sobic005G216700--Sobic002G068000 Sobic002G334000 Sobic002G334000 Sobic005G216700--Sobic002G334000 Sobic007G206800 Sobic007G206800 Sobic005G216700--Sobic007G206800 Sobic005G216700--Sobic010G158400 Sobic005G216700--Sobic005G080600 Sobic003G046700 Sobic003G046700 Sobic005G216700--Sobic003G046700 Sobic003G182200--Sobic007G100700 Sobic006G019700 Sobic006G019700 Sobic003G182200--Sobic006G019700 Sobic003G182200--Sobic003G426500 Sobic006G092700 Sobic006G092700 Sobic003G182200--Sobic006G092700 Sobic003G182200--Sobic008G011700 Sobic004G306900 Sobic004G306900 Sobic003G182200--Sobic004G306900 Sobic004G322100 Sobic004G322100 Sobic003G182200--Sobic004G322100 Sobic003G182200--Sobic009G259800 Sobic003G182200--Sobic007G008600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.