Gene annotation
Transcriptome id Sobic.010G091700.1
Synonym KDR, Sb10g008000
Functional annotation "PGL2/OsBUL1(Ortholog in rice:Heang and Sassa, 2012b (PubMedID : 31659932)
helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5Z724
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF179
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G26945 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g51320.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK01930 , KQK18885
Barley HORVU4Hr1G075250.15 , HORVU4Hr1G075250.14 , HORVU4Hr1G075250.13 , HORVU4Hr1G075250.11 , HORVU4Hr1G075250.19 , HORVU4Hr1G075250.18 , HORVU4Hr1G075250.39 , HORVU4Hr1G075250.30 , HORVU4Hr1G075250.33 , HORVU4Hr1G075250.32 , HORVU4Hr1G075250.34 , HORVU4Hr1G075250.37 , HORVU4Hr1G075250.36 , HORVU4Hr1G075250.29 , HORVU4Hr1G075250.25 , HORVU4Hr1G075250.20 , HORVU4Hr1G075250.9 , HORVU4Hr1G075250.8 , HORVU4Hr1G075250.7 , HORVU4Hr1G075250.6 , HORVU4Hr1G075250.5 , HORVU4Hr1G075250.4 , HORVU4Hr1G075250.3 , HORVU4Hr1G075250.2 , HORVU4Hr1G075250.1 , HORVU4Hr1G075250.40 , HORVU4Hr1G075250.41 , HORVU4Hr1G075250.42 , HORVU7Hr1G038060.1 , HORVU7Hr1G038060.2 , HORVU7Hr1G038060.3
Wheat TraesCS4D02G286600 , TraesCS7A02G185300 , TraesCS2A02G521500 , TraesCS2B02G550800 , TraesCS7B02G090500 , TraesCS7D02G187000 , TraesCS4B02G287900 , TraesCS4A02G016300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G020500 3-ketoacyl-CoA synthase 6, putative, expressed K15397: 3-ketoacyl-CoA synthase
2 Sobic.007G094600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450 protein, putative, expressed -
3 Sobic.001G184400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR55 - Auxin-responsive SAUR gene family member, expressed -
4 Sobic.001G247800 - -
5 Sobic.002G314600 expressed protein -
6 Sobic.002G367300 "qGW7/GL7(Ortholog in rice:Wang et al., 2015a(PubMedID : 31659862)@expressed protein -
7 Sobic.010G208500 - -
8 Sobic.006G020600 3-ketoacyl-CoA synthase 6, putative, expressed -
9 Sobic.002G051400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed K00485: dimethylaniline monooxygenase (N-oxide forming)
10 Sobic.005G195700 ribonucleoside-diphosphate reductase small chain, putative, expressed K10808: ribonucleoside-diphosphate reductase subunit M2
11 Sobic.008G108900 GRF zinc finger family protein, expressed -
12 Sobic.007G115000 - -
13 Sobic.004G164650 - -
14 Sobic.001G045700 "CESA3-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA2 - cellulose synthase, expressed K10999: cellulose synthase A
15 Sobic.002G049000 frigida, putative, expressed -
16 Sobic.009G109101 - -
17 Sobic.003G422000 "Glucan endo-1,3-beta-d-glucosidase"(PubMedID : 24906815)@"beta-1,3-glucanase "(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
18 Sobic.002G285200 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR53 - Auxin-responsive SAUR gene family member, expressed -
19 Sobic.002G051450 - -
20 Sobic.002G316000 expressed protein -


Gene co-expression network
sample Sobic010G091700 Sobic010G091700 Sobic006G020500 Sobic006G020500 Sobic010G091700--Sobic006G020500 Sobic007G094600 Sobic007G094600 Sobic010G091700--Sobic007G094600 Sobic001G184400 Sobic001G184400 Sobic010G091700--Sobic001G184400 Sobic001G247800 Sobic001G247800 Sobic010G091700--Sobic001G247800 Sobic002G314600 Sobic002G314600 Sobic010G091700--Sobic002G314600 Sobic002G367300 Sobic002G367300 Sobic010G091700--Sobic002G367300 Sobic010G208500 Sobic010G208500 Sobic010G091700--Sobic010G208500 Sobic006G020600 Sobic006G020600 Sobic010G091700--Sobic006G020600 Sobic002G051400 Sobic002G051400 Sobic010G091700--Sobic002G051400 Sobic006G020500--Sobic007G094600 Sobic006G020500--Sobic006G020600 Sobic006G020500--Sobic002G314600 Sobic006G020500--Sobic002G051400 Sobic006G020500--Sobic010G091700 Sobic008G105500 Sobic008G105500 Sobic006G020500--Sobic008G105500 Sobic009G109450 Sobic009G109450 Sobic006G020500--Sobic009G109450 Sobic009G231300 Sobic009G231300 Sobic006G020500--Sobic009G231300 Sobic009G078500 Sobic009G078500 Sobic006G020500--Sobic009G078500 Sobic007G094600--Sobic006G020500 Sobic007G094600--Sobic006G020600 Sobic007G094600--Sobic002G314600 Sobic007G094600--Sobic002G051400 Sobic007G094600--Sobic010G091700 Sobic007G094600--Sobic009G078500 Sobic008G124100 Sobic008G124100 Sobic007G094600--Sobic008G124100 Sobic003G422000 Sobic003G422000 Sobic007G094600--Sobic003G422000 Sobic008G108900 Sobic008G108900 Sobic007G094600--Sobic008G108900 Sobic002G049000 Sobic002G049000 Sobic001G184400--Sobic002G049000 Sobic001G184400--Sobic010G091700 Sobic001G184400--Sobic002G367300 Sobic002G090400 Sobic002G090400 Sobic001G184400--Sobic002G090400 Sobic001G184400--Sobic010G208500 Sobic002G297800 Sobic002G297800 Sobic001G184400--Sobic002G297800 Sobic005G195700 Sobic005G195700 Sobic001G184400--Sobic005G195700 Sobic001G393401 Sobic001G393401 Sobic001G184400--Sobic001G393401 Sobic001G422366 Sobic001G422366 Sobic001G184400--Sobic001G422366 Sobic001G247800--Sobic010G091700 Sobic008G030400 Sobic008G030400 Sobic001G247800--Sobic008G030400 Sobic001G247800--Sobic002G367300 Sobic009G259500 Sobic009G259500 Sobic001G247800--Sobic009G259500 Sobic004G154600 Sobic004G154600 Sobic001G247800--Sobic004G154600 Sobic002G216600 Sobic002G216600 Sobic001G247800--Sobic002G216600 Sobic001G247800--Sobic010G208500 Sobic005G204100 Sobic005G204100 Sobic001G247800--Sobic005G204100 Sobic002G316000 Sobic002G316000 Sobic001G247800--Sobic002G316000 Sobic002G314600--Sobic006G020500 Sobic002G314600--Sobic007G094600 Sobic002G314600--Sobic006G020600 Sobic002G314600--Sobic010G091700 Sobic002G314600--Sobic008G124100 Sobic002G314600--Sobic002G051400 Sobic005G130800 Sobic005G130800 Sobic002G314600--Sobic005G130800 Sobic003G089801 Sobic003G089801 Sobic002G314600--Sobic003G089801 Sobic002G314600--Sobic009G109450 Sobic006G262600 Sobic006G262600 Sobic002G367300--Sobic006G262600 Sobic002G367300--Sobic010G091700 Sobic002G367300--Sobic001G184400 Sobic009G011500 Sobic009G011500 Sobic002G367300--Sobic009G011500 Sobic003G380500 Sobic003G380500 Sobic002G367300--Sobic003G380500 Sobic002G367300--Sobic004G154600 Sobic004G199700 Sobic004G199700 Sobic002G367300--Sobic004G199700 Sobic003G174900 Sobic003G174900 Sobic002G367300--Sobic003G174900 Sobic004G205500 Sobic004G205500 Sobic002G367300--Sobic004G205500 Sobic006G132200 Sobic006G132200 Sobic010G208500--Sobic006G132200 Sobic010G208500--Sobic008G108900 Sobic003G424100 Sobic003G424100 Sobic010G208500--Sobic003G424100 Sobic002G062300 Sobic002G062300 Sobic010G208500--Sobic002G062300 Sobic005G212600 Sobic005G212600 Sobic010G208500--Sobic005G212600 Sobic009G109101 Sobic009G109101 Sobic010G208500--Sobic009G109101 Sobic009G196700 Sobic009G196700 Sobic010G208500--Sobic009G196700 Sobic009G113600 Sobic009G113600 Sobic010G208500--Sobic009G113600 Sobic007G115000 Sobic007G115000 Sobic010G208500--Sobic007G115000 Sobic006G020600--Sobic007G094600 Sobic006G020600--Sobic006G020500 Sobic006G020600--Sobic002G051400 Sobic006G020600--Sobic008G124100 Sobic010G146200 Sobic010G146200 Sobic006G020600--Sobic010G146200 Sobic006G020600--Sobic002G314600 Sobic006G020600--Sobic009G078500 Sobic006G020600--Sobic009G231300 Sobic003G176100 Sobic003G176100 Sobic006G020600--Sobic003G176100 Sobic002G051400--Sobic009G113600 Sobic007G059300 Sobic007G059300 Sobic002G051400--Sobic007G059300 Sobic002G051400--Sobic008G108900 Sobic002G051400--Sobic002G062300 Sobic002G051400--Sobic003G176100 Sobic002G051400--Sobic009G196700 Sobic002G051400--Sobic010G146200 SobicK024000 SobicK024000 Sobic002G051400--SobicK024000 Sobic008G009500 Sobic008G009500 Sobic002G051400--Sobic008G009500
Octagon: transcription factors


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