Gene annotation
Transcriptome id Sobic.010G104200.3,Sobic.010G104200.2,Sobic.010G104200.4,Sobic.010G104200.1
Synonym Sb10g009080
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A194YIB5
Pfam PF13920
Panther DB PTHR14879
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24204 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g14200.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G055100 - -
2 Sobic.005G149000 astaxanthin synthase KC28, putative, expressed -
3 Sobic.010G063433 - -
4 Sobic.002G007250 - -
5 Sobic.008G009500 pentatricopeptide, putative, expressed -
6 Sobic.K024000 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
7 Sobic.008G031350 - -
8 Sobic.005G203400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NBS-LRR type disease resistance protein, putative, expressed -
9 Sobic.009G113600 - -
10 Sobic.008G117900 OsGrx_C12 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
11 Sobic.006G196000 expressed protein -
12 Sobic.005G130500 terpene synthase, putative, expressed -
13 Sobic.008G182500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thaumatin, putative, expressed -
14 Sobic.005G108300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed K14506: jasmonic acid-amino synthetase
15 Sobic.002G051400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed K00485: dimethylaniline monooxygenase (N-oxide forming)
16 Sobic.010G146200 homeobox associated leucine zipper, putative, expressed -
17 Sobic.002G062300 expressed protein -
18 Sobic.005G212600 NBS-LRR disease resistance protein, putative, expressed -
19 Sobic.006G167250 - -
20 Sobic.007G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic010G104200 Sobic010G104200 Sobic006G055100 Sobic006G055100 Sobic010G104200--Sobic006G055100 Sobic005G149000 Sobic005G149000 Sobic010G104200--Sobic005G149000 Sobic010G063433 Sobic010G063433 Sobic010G104200--Sobic010G063433 Sobic002G007250 Sobic002G007250 Sobic010G104200--Sobic002G007250 Sobic008G009500 Sobic008G009500 Sobic010G104200--Sobic008G009500 SobicK024000 SobicK024000 Sobic010G104200--SobicK024000 Sobic008G031350 Sobic008G031350 Sobic010G104200--Sobic008G031350 Sobic005G203400 Sobic005G203400 Sobic010G104200--Sobic005G203400 Sobic009G113600 Sobic009G113600 Sobic010G104200--Sobic009G113600 Sobic006G055100--Sobic010G104200 Sobic006G055100--Sobic005G149000 Sobic008G117900 Sobic008G117900 Sobic006G055100--Sobic008G117900 Sobic008G052450 Sobic008G052450 Sobic006G055100--Sobic008G052450 Sobic006G055100--Sobic010G063433 Sobic006G055100--SobicK024000 Sobic002G060500 Sobic002G060500 Sobic006G055100--Sobic002G060500 Sobic006G055100--Sobic009G113600 Sobic009G026400 Sobic009G026400 Sobic006G055100--Sobic009G026400 Sobic005G221425 Sobic005G221425 Sobic005G149000--Sobic005G221425 Sobic001G253100 Sobic001G253100 Sobic005G149000--Sobic001G253100 Sobic004G076732 Sobic004G076732 Sobic005G149000--Sobic004G076732 Sobic008G079100 Sobic008G079100 Sobic005G149000--Sobic008G079100 Sobic005G149000--Sobic008G009500 Sobic005G110430 Sobic005G110430 Sobic005G149000--Sobic005G110430 Sobic009G209800 Sobic009G209800 Sobic005G149000--Sobic009G209800 Sobic005G149000--Sobic008G052450 Sobic005G149000--SobicK024000 Sobic001G028600 Sobic001G028600 Sobic010G063433--Sobic001G028600 Sobic001G128800 Sobic001G128800 Sobic010G063433--Sobic001G128800 Sobic010G063433--Sobic010G104200 Sobic010G063433--Sobic006G055100 Sobic010G063433--Sobic002G007250 Sobic003G311250 Sobic003G311250 Sobic010G063433--Sobic003G311250 Sobic008G061500 Sobic008G061500 Sobic010G063433--Sobic008G061500 Sobic001G287301 Sobic001G287301 Sobic010G063433--Sobic001G287301 Sobic008G042250 Sobic008G042250 Sobic010G063433--Sobic008G042250 Sobic001G345333 Sobic001G345333 Sobic002G007250--Sobic001G345333 Sobic010G248200 Sobic010G248200 Sobic002G007250--Sobic010G248200 Sobic002G108800 Sobic002G108800 Sobic002G007250--Sobic002G108800 Sobic004G212800 Sobic004G212800 Sobic002G007250--Sobic004G212800 Sobic001G243901 Sobic001G243901 Sobic002G007250--Sobic001G243901 Sobic004G164600 Sobic004G164600 Sobic002G007250--Sobic004G164600 Sobic007G073400 Sobic007G073400 Sobic002G007250--Sobic007G073400 Sobic002G253500 Sobic002G253500 Sobic002G007250--Sobic002G253500 Sobic002G007250--Sobic008G042250 Sobic008G009500--SobicK024000 Sobic008G009500--Sobic004G076732 Sobic002G062300 Sobic002G062300 Sobic008G009500--Sobic002G062300 Sobic008G009500--Sobic009G113600 Sobic008G009500--Sobic001G253100 Sobic008G009500--Sobic007G073400 Sobic008G009500--Sobic009G209800 Sobic008G009500--Sobic008G031350 Sobic008G009500--Sobic005G221425 SobicK024000--Sobic008G009500 SobicK024000--Sobic009G113600 SobicK024000--Sobic002G062300 Sobic007G059300 Sobic007G059300 SobicK024000--Sobic007G059300 SobicK024000--Sobic009G209800 Sobic003G031750 Sobic003G031750 SobicK024000--Sobic003G031750 SobicK024000--Sobic001G253100 SobicK024000--Sobic008G079100 Sobic002G221200 Sobic002G221200 SobicK024000--Sobic002G221200 Sobic008G031350--Sobic009G113600 Sobic008G031350--Sobic008G009500 Sobic008G031350--SobicK024000 Sobic008G031350--Sobic007G073400 Sobic008G031350--Sobic002G062300 Sobic008G031350--Sobic004G164600 Sobic008G031350--Sobic002G007250 Sobic005G212600 Sobic005G212600 Sobic008G031350--Sobic005G212600 Sobic006G132200 Sobic006G132200 Sobic008G031350--Sobic006G132200 Sobic005G203400--Sobic005G212600 Sobic005G203400--Sobic002G062300 Sobic005G203400--Sobic008G031350 Sobic005G203400--Sobic009G113600 Sobic005G203400--Sobic008G009500 Sobic005G203400--Sobic007G073400 Sobic005G203400--Sobic006G132200 Sobic005G203400--Sobic001G253100 Sobic009G196700 Sobic009G196700 Sobic005G203400--Sobic009G196700 Sobic009G113600--Sobic002G062300 Sobic009G113600--Sobic007G059300 Sobic009G113600--SobicK024000 Sobic009G113600--Sobic009G196700 Sobic009G113600--Sobic008G009500 Sobic008G108900 Sobic008G108900 Sobic009G113600--Sobic008G108900 Sobic009G113600--Sobic003G031750 Sobic009G113600--Sobic008G031350 Sobic010G146200 Sobic010G146200 Sobic009G113600--Sobic010G146200
Octagon: transcription factors


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