Gene annotation
Transcriptome id Sobic.010G160500.3,Sobic.010G160500.2,Sobic.010G160500.1,Sobic.010G160500.4
Synonym Sb10g021310
Functional annotation -
UniProt A0A1W0VTB6 , A0A1W0VTC9 , A0A1W0VTB1
Pfam PF04851 PF13959 PF00271 PF00271 PF13959 PF04851
Panther DB PTHR24031:SF305 PTHR24031 PTHR24031 PTHR24031:SF305
NCBI CDD -
KEGG Orthology K13179; DDX18, ATP-dependent RNA helicase DDX18/HAS1
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding GO:0003677DNA binding GO:0005524ATP binding GO:0016787hydrolase activity


Orthologs (automatic annotation)
TAIR AT3G18600 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g58810.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a053975 , Zm00025a016542 , Zm00025a007714
Brachypodium KQJ89637 , KQJ92010
Barley HORVU4Hr1G000640.3 , HORVU4Hr1G000640.1 , HORVU4Hr1G000640.2 , HORVU5Hr1G010160.1 , HORVU5Hr1G010160.3 , HORVU5Hr1G010160.2 , HORVU2Hr1G072780.3
Wheat TraesCS6D02G292400 , TraesCS5B02G120400 , TraesCS5D02G050600 , TraesCS6B02G342900 , TraesCS6A02G312900 , TraesCS5A02G114200 , TraesCS5D02G127000 , TraesCS6A02G356000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G219950 - -
2 Sobic.001G061400 protein kinase, putative, expressed -
3 Sobic.002G356300 expressed protein -
4 Sobic.010G195400 dihydroflavonol-4-reductase, putative, expressed -
5 Sobic.009G118500 zinc finger protein, putative, expressed -
6 Sobic.004G329600 SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
7 Sobic.001G164800 B3 DNA binding domain containing protein, expressed -
8 Sobic.009G152300 - -
9 Sobic.004G091401 - -
10 Sobic.005G054900 acyl-CoA synthetase protein, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
11 Sobic.010G256100 LTPL154 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.003G247000 OsMan01 - Endo-Beta-Mannanase, expressed K19355: mannan endo-1,4-beta-mannosidase
13 Sobic.007G197500 expressed protein -
14 Sobic.004G312400 Peptidase family C50, putative, expressed K02365: separase
15 Sobic.008G079650 - -
16 Sobic.002G094400 expressed protein -
17 Sobic.009G104600 small hydrophilic plant seed protein, putative, expressed -
18 Sobic.010G249900 pentatricopeptide, putative, expressed -
19 Sobic.008G112550 - -
20 Sobic.008G149400 B3 DNA binding domain containing protein, expressed -


Gene co-expression network
sample Sobic010G160500 Sobic010G160500 Sobic006G219950 Sobic006G219950 Sobic010G160500--Sobic006G219950 Sobic001G061400 Sobic001G061400 Sobic010G160500--Sobic001G061400 Sobic002G356300 Sobic002G356300 Sobic010G160500--Sobic002G356300 Sobic010G195400 Sobic010G195400 Sobic010G160500--Sobic010G195400 Sobic009G118500 Sobic009G118500 Sobic010G160500--Sobic009G118500 Sobic004G329600 Sobic004G329600 Sobic010G160500--Sobic004G329600 Sobic001G164800 Sobic001G164800 Sobic010G160500--Sobic001G164800 Sobic009G152300 Sobic009G152300 Sobic010G160500--Sobic009G152300 Sobic004G091401 Sobic004G091401 Sobic010G160500--Sobic004G091401 Sobic008G112550 Sobic008G112550 Sobic006G219950--Sobic008G112550 Sobic003G333300 Sobic003G333300 Sobic006G219950--Sobic003G333300 Sobic006G219950--Sobic004G329600 Sobic010G111450 Sobic010G111450 Sobic006G219950--Sobic010G111450 Sobic002G251050 Sobic002G251050 Sobic006G219950--Sobic002G251050 Sobic009G121150 Sobic009G121150 Sobic006G219950--Sobic009G121150 Sobic001G166100 Sobic001G166100 Sobic006G219950--Sobic001G166100 Sobic003G344950 Sobic003G344950 Sobic006G219950--Sobic003G344950 Sobic002G040201 Sobic002G040201 Sobic006G219950--Sobic002G040201 Sobic010G213000 Sobic010G213000 Sobic001G061400--Sobic010G213000 Sobic001G519100 Sobic001G519100 Sobic001G061400--Sobic001G519100 Sobic006G276900 Sobic006G276900 Sobic001G061400--Sobic006G276900 Sobic007G067900 Sobic007G067900 Sobic001G061400--Sobic007G067900 Sobic001G061400--Sobic010G160500 Sobic002G265200 Sobic002G265200 Sobic001G061400--Sobic002G265200 Sobic001G061400--Sobic009G118500 Sobic001G061400--Sobic004G329600 Sobic001G061400--Sobic006G219950 Sobic009G104600 Sobic009G104600 Sobic002G356300--Sobic009G104600 Sobic002G185100 Sobic002G185100 Sobic002G356300--Sobic002G185100 Sobic001G144900 Sobic001G144900 Sobic002G356300--Sobic001G144900 Sobic001G497700 Sobic001G497700 Sobic002G356300--Sobic001G497700 Sobic010G007800 Sobic010G007800 Sobic002G356300--Sobic010G007800 Sobic007G162700 Sobic007G162700 Sobic002G356300--Sobic007G162700 Sobic004G092700 Sobic004G092700 Sobic002G356300--Sobic004G092700 Sobic010G269950 Sobic010G269950 Sobic002G356300--Sobic010G269950 Sobic009G104500 Sobic009G104500 Sobic002G356300--Sobic009G104500 Sobic003G100000 Sobic003G100000 Sobic010G195400--Sobic003G100000 Sobic005G054900 Sobic005G054900 Sobic010G195400--Sobic005G054900 Sobic010G195400--Sobic001G164800 Sobic005G073700 Sobic005G073700 Sobic010G195400--Sobic005G073700 Sobic001G254700 Sobic001G254700 Sobic010G195400--Sobic001G254700 Sobic010G054800 Sobic010G054800 Sobic010G195400--Sobic010G054800 Sobic006G047700 Sobic006G047700 Sobic010G195400--Sobic006G047700 Sobic009G250500 Sobic009G250500 Sobic010G195400--Sobic009G250500 Sobic007G008500 Sobic007G008500 Sobic010G195400--Sobic007G008500 Sobic004G312400 Sobic004G312400 Sobic009G118500--Sobic004G312400 Sobic003G107000 Sobic003G107000 Sobic009G118500--Sobic003G107000 Sobic001G315600 Sobic001G315600 Sobic009G118500--Sobic001G315600 Sobic003G032301 Sobic003G032301 Sobic009G118500--Sobic003G032301 Sobic002G317900 Sobic002G317900 Sobic009G118500--Sobic002G317900 Sobic009G118500--Sobic001G061400 Sobic001G221601 Sobic001G221601 Sobic009G118500--Sobic001G221601 Sobic009G118500--Sobic010G160500 Sobic002G054100 Sobic002G054100 Sobic009G118500--Sobic002G054100 Sobic004G329600--Sobic001G164800 Sobic004G329600--Sobic005G054900 Sobic010G256100 Sobic010G256100 Sobic004G329600--Sobic010G256100 Sobic004G000900 Sobic004G000900 Sobic004G329600--Sobic004G000900 Sobic004G349550 Sobic004G349550 Sobic004G329600--Sobic004G349550 Sobic010G110100 Sobic010G110100 Sobic004G329600--Sobic010G110100 Sobic003G061500 Sobic003G061500 Sobic004G329600--Sobic003G061500 Sobic005G184700 Sobic005G184700 Sobic004G329600--Sobic005G184700 Sobic005G184800 Sobic005G184800 Sobic004G329600--Sobic005G184800 Sobic001G164800--Sobic005G054900 Sobic001G164800--Sobic007G008500 Sobic002G046000 Sobic002G046000 Sobic001G164800--Sobic002G046000 Sobic001G164800--Sobic004G349550 Sobic001G166900 Sobic001G166900 Sobic001G164800--Sobic001G166900 Sobic002G327600 Sobic002G327600 Sobic001G164800--Sobic002G327600 Sobic006G248000 Sobic006G248000 Sobic001G164800--Sobic006G248000 Sobic003G443400 Sobic003G443400 Sobic001G164800--Sobic003G443400 Sobic001G164800--Sobic010G256100 Sobic001G386500 Sobic001G386500 Sobic009G152300--Sobic001G386500 Sobic008G102050 Sobic008G102050 Sobic009G152300--Sobic008G102050 Sobic009G152300--Sobic001G315600 Sobic003G247000 Sobic003G247000 Sobic009G152300--Sobic003G247000 Sobic002G231100 Sobic002G231100 Sobic009G152300--Sobic002G231100 Sobic009G152300--Sobic002G356300 Sobic007G004900 Sobic007G004900 Sobic009G152300--Sobic007G004900 Sobic006G084100 Sobic006G084100 Sobic009G152300--Sobic006G084100 Sobic009G152300--Sobic010G160500 Sobic003G427000 Sobic003G427000 Sobic004G091401--Sobic003G427000 Sobic002G394900 Sobic002G394900 Sobic004G091401--Sobic002G394900 Sobic003G013950 Sobic003G013950 Sobic004G091401--Sobic003G013950 Sobic009G241900 Sobic009G241900 Sobic004G091401--Sobic009G241900 Sobic008G191700 Sobic008G191700 Sobic004G091401--Sobic008G191700 Sobic004G091401--Sobic002G040201 Sobic010G211200 Sobic010G211200 Sobic004G091401--Sobic010G211200 Sobic010G121401 Sobic010G121401 Sobic004G091401--Sobic010G121401 Sobic001G366300 Sobic001G366300 Sobic004G091401--Sobic001G366300
Octagon: transcription factors


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