Gene annotation
Transcriptome id Sobic.010G211400.1
Synonym Sb10g025810
Functional annotation OsRCI2-9 - Putative low temperature and salt responsive protein, expressed
UniProt C5Z748
Pfam PF01679
Panther DB PTHR21659 PTHR21659:SF21
NCBI CDD KOG1773; Stress responsive protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT4G28088 : Low temperature and salt responsive protein family
RAP-DB (Rice) LOC_Os06g44220.1 : OsRCI2-9 - Putative low temperature and salt responsive protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK16855
Barley HORVU7Hr1G113020.1 , HORVU7Hr1G113020.4 , HORVU7Hr1G113020.5 , HORVU7Hr1G113020.6 , HORVU7Hr1G113020.2 , HORVU7Hr1G113020.3
Wheat TraesCS7D02G491500 , TraesCS7B02G411400 , TraesCS7A02G504000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G351300 expressed protein -
2 Sobic.001G504100 - -
3 Sobic.004G229400 phosphate-induced protein 1 conserved region domain containing protein, expressed -
4 Sobic.002G184300 heat shock protein DnaJ, putative, expressed -
5 Sobic.007G122800 expressed protein -
6 Sobic.005G013500 WRKY52, expressed -
7 Sobic.001G363400 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
8 Sobic.009G205500 harpin-induced protein 1 domain containing protein, expressed -
9 Sobic.009G183900 ICE-like protease p20 domain containing protein, putative, expressed -
10 Sobic.004G064500 class I glutamine amidotransferase, putative, expressed -
11 Sobic.002G358300 expressed protein -
12 Sobic.005G180500 plastocyanin-like domain containing protein, putative, expressed -
13 Sobic.004G141100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
14 Sobic.007G058400 Superior methylation activity against resveratrol compared with that of sbOMT3(PubMedID : 25033820)@O-methyltransferase, putative, expressed -
15 Sobic.007G148500 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.003G415000 DUF567 domain containing protein, putative, expressed -
17 Sobic.004G229500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
18 Sobic.001G311900 OsSCP47 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
19 Sobic.006G234466 - -
20 Sobic.004G308900 AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic010G211400 Sobic010G211400 Sobic002G351300 Sobic002G351300 Sobic010G211400--Sobic002G351300 Sobic001G504100 Sobic001G504100 Sobic010G211400--Sobic001G504100 Sobic004G229400 Sobic004G229400 Sobic010G211400--Sobic004G229400 Sobic002G184300 Sobic002G184300 Sobic010G211400--Sobic002G184300 Sobic007G122800 Sobic007G122800 Sobic010G211400--Sobic007G122800 Sobic005G013500 Sobic005G013500 Sobic010G211400--Sobic005G013500 Sobic001G363400 Sobic001G363400 Sobic010G211400--Sobic001G363400 Sobic009G205500 Sobic009G205500 Sobic010G211400--Sobic009G205500 Sobic009G183900 Sobic009G183900 Sobic010G211400--Sobic009G183900 Sobic004G141100 Sobic004G141100 Sobic002G351300--Sobic004G141100 Sobic008G009400 Sobic008G009400 Sobic002G351300--Sobic008G009400 Sobic007G017500 Sobic007G017500 Sobic002G351300--Sobic007G017500 Sobic006G075400 Sobic006G075400 Sobic002G351300--Sobic006G075400 Sobic003G299300 Sobic003G299300 Sobic002G351300--Sobic003G299300 Sobic002G351300--Sobic009G205500 Sobic006G235100 Sobic006G235100 Sobic002G351300--Sobic006G235100 Sobic004G041900 Sobic004G041900 Sobic002G351300--Sobic004G041900 Sobic004G294400 Sobic004G294400 Sobic002G351300--Sobic004G294400 Sobic001G342400 Sobic001G342400 Sobic001G504100--Sobic001G342400 Sobic006G234466 Sobic006G234466 Sobic001G504100--Sobic006G234466 Sobic001G234900 Sobic001G234900 Sobic001G504100--Sobic001G234900 Sobic002G391800 Sobic002G391800 Sobic001G504100--Sobic002G391800 Sobic005G222500 Sobic005G222500 Sobic001G504100--Sobic005G222500 Sobic001G504100--Sobic010G211400 Sobic002G301900 Sobic002G301900 Sobic001G504100--Sobic002G301900 Sobic010G270700 Sobic010G270700 Sobic001G504100--Sobic010G270700 Sobic006G089000 Sobic006G089000 Sobic001G504100--Sobic006G089000 Sobic004G229400--Sobic009G183900 Sobic002G234400 Sobic002G234400 Sobic004G229400--Sobic002G234400 Sobic004G229400--Sobic009G205500 Sobic007G058400 Sobic007G058400 Sobic004G229400--Sobic007G058400 Sobic003G427800 Sobic003G427800 Sobic004G229400--Sobic003G427800 Sobic004G229500 Sobic004G229500 Sobic004G229400--Sobic004G229500 Sobic010G064000 Sobic010G064000 Sobic004G229400--Sobic010G064000 Sobic008G158732 Sobic008G158732 Sobic004G229400--Sobic008G158732 Sobic004G229400--Sobic005G013500 Sobic002G184300--Sobic001G363400 Sobic003G230100 Sobic003G230100 Sobic002G184300--Sobic003G230100 Sobic002G358300 Sobic002G358300 Sobic002G184300--Sobic002G358300 Sobic004G097100 Sobic004G097100 Sobic002G184300--Sobic004G097100 Sobic009G032000 Sobic009G032000 Sobic002G184300--Sobic009G032000 Sobic002G184300--Sobic009G205500 Sobic004G246600 Sobic004G246600 Sobic002G184300--Sobic004G246600 Sobic002G184300--Sobic005G013500 Sobic004G308900 Sobic004G308900 Sobic002G184300--Sobic004G308900 Sobic007G122800--Sobic002G358300 Sobic007G122800--Sobic004G308900 Sobic004G191400 Sobic004G191400 Sobic007G122800--Sobic004G191400 Sobic007G122800--Sobic004G294400 Sobic004G191300 Sobic004G191300 Sobic007G122800--Sobic004G191300 Sobic001G195200 Sobic001G195200 Sobic007G122800--Sobic001G195200 Sobic006G007900 Sobic006G007900 Sobic007G122800--Sobic006G007900 Sobic009G122400 Sobic009G122400 Sobic007G122800--Sobic009G122400 Sobic003G268600 Sobic003G268600 Sobic007G122800--Sobic003G268600 Sobic005G013500--Sobic004G229500 Sobic005G013500--Sobic009G183900 Sobic005G013500--Sobic004G246600 Sobic005G013500--Sobic009G032000 Sobic009G144700 Sobic009G144700 Sobic005G013500--Sobic009G144700 Sobic005G013500--Sobic004G097100 Sobic005G013500--Sobic001G363400 Sobic005G013500--Sobic004G294400 Sobic004G108200 Sobic004G108200 Sobic005G013500--Sobic004G108200 Sobic001G363400--Sobic002G184300 Sobic001G330200 Sobic001G330200 Sobic001G363400--Sobic001G330200 Sobic001G363400--Sobic005G013500 Sobic001G363400--Sobic009G032000 Sobic001G330100 Sobic001G330100 Sobic001G363400--Sobic001G330100 Sobic001G363400--Sobic002G358300 Sobic001G363400--Sobic009G144700 Sobic001G330400 Sobic001G330400 Sobic001G363400--Sobic001G330400 Sobic001G363400--Sobic004G246600 Sobic009G205500--Sobic003G427800 Sobic009G205500--Sobic008G158732 Sobic009G205500--Sobic009G183900 Sobic009G205500--Sobic002G184300 Sobic009G205500--Sobic004G229400 Sobic009G205500--Sobic005G013500 Sobic009G205500--Sobic004G229500 Sobic009G205500--Sobic002G351300 Sobic009G205500--Sobic009G032000 Sobic009G183900--Sobic002G234400 Sobic009G183900--Sobic005G013500 Sobic009G183900--Sobic004G229400 Sobic009G183900--Sobic009G144700 Sobic009G183900--Sobic004G108200 Sobic009G183900--Sobic009G205500 Sobic009G183900--Sobic004G097100 Sobic009G183900--Sobic004G229500 Sobic002G388900 Sobic002G388900 Sobic009G183900--Sobic002G388900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.