Gene annotation
Transcriptome id Sobic.001G015700.1
Synonym Sb01g001540
Functional annotation GDSL-like lipase/acylhydrolase, putative, expressed
UniProt C5WSZ5
Pfam PF00657
Panther DB PTHR22835:SF231 PTHR22835
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016788; hydrolase activity, acting on ester bonds


Orthologs (automatic annotation)
TAIR AT3G48460 : GDSL-like Lipase/Acylhydrolase superfamily protein
RAP-DB (Rice) LOC_Os03g62740.1 : GDSL-like lipase/acylhydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a008991 , Zm00025a041574 , Zm00025a041575 , Zm00025a049986 , Zm00025a050939 , Zm00025a048945
Brachypodium PNT70157 , KQK03301 , KQK03300 , KQK03304 , KQK12157
Barley HORVU7Hr1G024220.3 , HORVU7Hr1G024220.2 , HORVU7Hr1G024220.4 , HORVU3Hr1G028060.3 , HORVU3Hr1G028060.2 , HORVU3Hr1G028020.3 , HORVU3Hr1G028020.2 , HORVU3Hr1G028020.5 , HORVU3Hr1G028020.8 , HORVU3Hr1G028000.3 , HORVU3Hr1G028000.2 , HORVU3Hr1G028000.1 , HORVU3Hr1G028020.1 , HORVU3Hr1G028020.4 , HORVU3Hr1G028020.7 , HORVU3Hr1G028020.6 , HORVU7Hr1G024220.1 , HORVU7Hr1G024220.5
Wheat TraesCS3A02G141300 , TraesCS3B02G163700 , TraesCS3B02G163700 , TraesCS7D02G108900 , TraesCSU02G095400 , TraesCS4A02G341500 , TraesCS5A02G394300 , TraesCS3B02G163300 , TraesCS5D02G531400 , TraesCS5B02G533100 , TraesCS7A02G113600 , TraesCS3D02G146200 , TraesCS3A02G140900 , TraesCS5D02G531400 , TraesCS3A02G141100 , TraesCS3D02G145800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G015700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G122300 glycosyl hydrolase family 5 protein, putative, expressed -
2 Sobic.003G078400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase, putative, expressed -
3 Sobic.002G220700 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659855)@expressed protein -
4 Sobic.001G171200 expressed protein -
5 Sobic.009G088700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cellulase, putative, expressed -
6 Sobic.009G129700 serine/threonine-protein kinase, putative, expressed -
7 Sobic.001G271600 transferase family protein, putative, expressed -
8 Sobic.003G019900 GDSL-like lipase/acylhydrolase, putative, expressed -
9 Sobic.003G374100 beta-galactosidase precursor, putative, expressed -
10 Sobic.001G444500 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.007G106300 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
12 Sobic.002G360600 expressed protein -
13 Sobic.006G111100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@pathogenesis-related Bet v I family protein, putative, expressed -
14 Sobic.002G121900 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
15 Sobic.003G100700 serine/threonine-protein kinase, putative, expressed -
16 Sobic.004G072900 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.010G087600 heat shock 22 kDa protein, mitochondrial precursor, putative, expressed K13993: HSP20 family protein
18 Sobic.006G228000 glycine-rich protein 2, putative -
19 Sobic.005G156100 Long chain acyl CoA synthetase 2 LACS2 (At)(PubMedID : 27208977)@AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
20 Sobic.006G118800 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic001G015700 Sobic001G015700 Sobic006G122300 Sobic006G122300 Sobic001G015700--Sobic006G122300 Sobic003G078400 Sobic003G078400 Sobic001G015700--Sobic003G078400 Sobic002G220700 Sobic002G220700 Sobic001G015700--Sobic002G220700 Sobic001G171200 Sobic001G171200 Sobic001G015700--Sobic001G171200 Sobic009G088700 Sobic009G088700 Sobic001G015700--Sobic009G088700 Sobic009G129700 Sobic009G129700 Sobic001G015700--Sobic009G129700 Sobic001G271600 Sobic001G271600 Sobic001G015700--Sobic001G271600 Sobic003G019900 Sobic003G019900 Sobic001G015700--Sobic003G019900 Sobic003G374100 Sobic003G374100 Sobic001G015700--Sobic003G374100 Sobic006G122300--Sobic001G015700 Sobic006G122300--Sobic003G078400 Sobic006G122300--Sobic002G220700 Sobic006G122300--Sobic009G088700 Sobic007G106300 Sobic007G106300 Sobic006G122300--Sobic007G106300 Sobic006G118800 Sobic006G118800 Sobic006G122300--Sobic006G118800 Sobic006G122300--Sobic001G171200 Sobic001G083500 Sobic001G083500 Sobic006G122300--Sobic001G083500 Sobic001G444500 Sobic001G444500 Sobic006G122300--Sobic001G444500 Sobic003G078400--Sobic001G015700 Sobic003G078400--Sobic006G122300 Sobic003G078400--Sobic001G444500 Sobic003G078400--Sobic009G088700 Sobic003G078400--Sobic007G106300 Sobic003G078400--Sobic002G220700 Sobic003G078400--Sobic009G129700 Sobic003G078400--Sobic001G083500 Sobic003G100700 Sobic003G100700 Sobic003G078400--Sobic003G100700 Sobic002G220700--Sobic009G088700 Sobic003G091550 Sobic003G091550 Sobic002G220700--Sobic003G091550 Sobic002G220700--Sobic001G015700 Sobic002G220700--Sobic006G122300 Sobic004G072900 Sobic004G072900 Sobic002G220700--Sobic004G072900 Sobic002G220700--Sobic003G078400 Sobic003G274000 Sobic003G274000 Sobic002G220700--Sobic003G274000 Sobic003G317700 Sobic003G317700 Sobic002G220700--Sobic003G317700 Sobic001G123300 Sobic001G123300 Sobic002G220700--Sobic001G123300 Sobic004G220200 Sobic004G220200 Sobic001G171200--Sobic004G220200 Sobic006G097300 Sobic006G097300 Sobic001G171200--Sobic006G097300 Sobic007G128200 Sobic007G128200 Sobic001G171200--Sobic007G128200 Sobic004G234600 Sobic004G234600 Sobic001G171200--Sobic004G234600 Sobic002G121900 Sobic002G121900 Sobic001G171200--Sobic002G121900 Sobic007G193300 Sobic007G193300 Sobic001G171200--Sobic007G193300 Sobic010G194600 Sobic010G194600 Sobic001G171200--Sobic010G194600 Sobic001G086400 Sobic001G086400 Sobic001G171200--Sobic001G086400 Sobic001G457600 Sobic001G457600 Sobic001G171200--Sobic001G457600 Sobic009G088700--Sobic002G220700 Sobic009G088700--Sobic001G083500 Sobic009G088700--Sobic003G100700 Sobic009G088700--Sobic001G015700 Sobic009G088700--Sobic003G078400 Sobic009G088700--Sobic003G091550 Sobic006G068200 Sobic006G068200 Sobic009G088700--Sobic006G068200 Sobic004G313200 Sobic004G313200 Sobic009G088700--Sobic004G313200 Sobic009G088700--Sobic006G122300 Sobic001G074000 Sobic001G074000 Sobic009G129700--Sobic001G074000 Sobic001G298800 Sobic001G298800 Sobic009G129700--Sobic001G298800 Sobic001G522300 Sobic001G522300 Sobic009G129700--Sobic001G522300 Sobic009G129700--Sobic003G019900 Sobic005G104100 Sobic005G104100 Sobic009G129700--Sobic005G104100 Sobic003G070600 Sobic003G070600 Sobic009G129700--Sobic003G070600 Sobic003G283400 Sobic003G283400 Sobic009G129700--Sobic003G283400 Sobic001G199400 Sobic001G199400 Sobic009G129700--Sobic001G199400 Sobic003G360700 Sobic003G360700 Sobic009G129700--Sobic003G360700 Sobic003G365800 Sobic003G365800 Sobic001G271600--Sobic003G365800 Sobic005G020100 Sobic005G020100 Sobic001G271600--Sobic005G020100 Sobic001G271600--Sobic003G374100 Sobic006G107500 Sobic006G107500 Sobic001G271600--Sobic006G107500 Sobic006G228000 Sobic006G228000 Sobic001G271600--Sobic006G228000 Sobic003G295100 Sobic003G295100 Sobic001G271600--Sobic003G295100 Sobic003G090600 Sobic003G090600 Sobic001G271600--Sobic003G090600 Sobic009G169800 Sobic009G169800 Sobic001G271600--Sobic009G169800 Sobic003G085900 Sobic003G085900 Sobic001G271600--Sobic003G085900 Sobic006G274200 Sobic006G274200 Sobic003G019900--Sobic006G274200 Sobic001G493900 Sobic001G493900 Sobic003G019900--Sobic001G493900 Sobic003G338700 Sobic003G338700 Sobic003G019900--Sobic003G338700 Sobic008G151600 Sobic008G151600 Sobic003G019900--Sobic008G151600 Sobic007G147200 Sobic007G147200 Sobic003G019900--Sobic007G147200 Sobic010G014500 Sobic010G014500 Sobic003G019900--Sobic010G014500 Sobic006G163300 Sobic006G163300 Sobic003G019900--Sobic006G163300 Sobic003G019900--Sobic001G074000 Sobic004G267600 Sobic004G267600 Sobic003G019900--Sobic004G267600 Sobic001G137800 Sobic001G137800 Sobic003G374100--Sobic001G137800 Sobic003G374100--Sobic006G228000 Sobic003G129200 Sobic003G129200 Sobic003G374100--Sobic003G129200 Sobic007G043000 Sobic007G043000 Sobic003G374100--Sobic007G043000 Sobic003G374100--Sobic002G121900 Sobic003G374100--Sobic004G234600 Sobic002G053350 Sobic002G053350 Sobic003G374100--Sobic002G053350 Sobic001G235200 Sobic001G235200 Sobic003G374100--Sobic001G235200 Sobic001G235100 Sobic001G235100 Sobic003G374100--Sobic001G235100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.