Gene annotation
Transcriptome id Sobic.003G078400.1
Synonym Sb03g006630
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
aspartic proteinase, putative, expressed
UniProt C5XQP2
Pfam PF00026
Panther DB PTHR13683 PTHR13683:SF274
NCBI CDD KOG1339; Aspartyl protease
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004190aspartic-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G25510 : Eukaryotic aspartyl protease family protein
RAP-DB (Rice) LOC_Os01g04710.1 : aspartic proteinase, putative, expressed
MaizeGDB (Corn) Zm00025a023515
Brachypodium KQK02610 , PNT69905
Barley HORVU3Hr1G009980.3 , HORVU3Hr1G009980.2 , HORVU3Hr1G009980.1
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.003G078400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G015700 GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.006G122300 glycosyl hydrolase family 5 protein, putative, expressed -
3 Sobic.001G444500 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.009G088700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cellulase, putative, expressed -
5 Sobic.007G106300 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
6 Sobic.002G220700 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659855)@expressed protein -
7 Sobic.009G129700 serine/threonine-protein kinase, putative, expressed -
8 Sobic.001G083500 plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.003G100700 serine/threonine-protein kinase, putative, expressed -
10 Sobic.001G033300 expansin precursor, putative, expressed -
11 Sobic.005G156100 Long chain acyl CoA synthetase 2 LACS2 (At)(PubMedID : 27208977)@AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
12 Sobic.006G118800 GDSL-like lipase/acylhydrolase, putative, expressed -
13 Sobic.002G335900 cyclin, putative, expressed K18812: cyclin D6, plant
14 Sobic.003G347100 - -
15 Sobic.004G145300 OsFBD12 - F-box and FBD domain containing protein, expressed -
16 Sobic.006G177000 cytochrome P450, putative, expressed K15398: fatty acid omega-hydroxylase
17 Sobic.006G110700 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.001G123100 Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed K05350: beta-glucosidase
19 Sobic.001G074000 receptor protein kinase CLAVATA1 precursor, putative, expressed -
20 Sobic.002G341700 expressed protein -


Gene co-expression network
sample Sobic003G078400 Sobic003G078400 Sobic001G015700 Sobic001G015700 Sobic003G078400--Sobic001G015700 Sobic006G122300 Sobic006G122300 Sobic003G078400--Sobic006G122300 Sobic001G444500 Sobic001G444500 Sobic003G078400--Sobic001G444500 Sobic009G088700 Sobic009G088700 Sobic003G078400--Sobic009G088700 Sobic007G106300 Sobic007G106300 Sobic003G078400--Sobic007G106300 Sobic002G220700 Sobic002G220700 Sobic003G078400--Sobic002G220700 Sobic009G129700 Sobic009G129700 Sobic003G078400--Sobic009G129700 Sobic001G083500 Sobic001G083500 Sobic003G078400--Sobic001G083500 Sobic003G100700 Sobic003G100700 Sobic003G078400--Sobic003G100700 Sobic001G015700--Sobic006G122300 Sobic001G015700--Sobic003G078400 Sobic001G015700--Sobic002G220700 Sobic001G171200 Sobic001G171200 Sobic001G015700--Sobic001G171200 Sobic001G015700--Sobic009G088700 Sobic001G015700--Sobic009G129700 Sobic001G271600 Sobic001G271600 Sobic001G015700--Sobic001G271600 Sobic003G019900 Sobic003G019900 Sobic001G015700--Sobic003G019900 Sobic003G374100 Sobic003G374100 Sobic001G015700--Sobic003G374100 Sobic006G122300--Sobic001G015700 Sobic006G122300--Sobic003G078400 Sobic006G122300--Sobic002G220700 Sobic006G122300--Sobic009G088700 Sobic006G122300--Sobic007G106300 Sobic006G118800 Sobic006G118800 Sobic006G122300--Sobic006G118800 Sobic006G122300--Sobic001G171200 Sobic006G122300--Sobic001G083500 Sobic006G122300--Sobic001G444500 Sobic001G444500--Sobic003G078400 Sobic001G444500--Sobic001G015700 Sobic001G444500--Sobic009G129700 Sobic005G104100 Sobic005G104100 Sobic001G444500--Sobic005G104100 Sobic005G156100 Sobic005G156100 Sobic001G444500--Sobic005G156100 Sobic001G444500--Sobic006G122300 Sobic001G444500--Sobic009G088700 Sobic003G070600 Sobic003G070600 Sobic001G444500--Sobic003G070600 Sobic001G444500--Sobic001G083500 Sobic009G088700--Sobic002G220700 Sobic009G088700--Sobic001G083500 Sobic009G088700--Sobic003G100700 Sobic009G088700--Sobic001G015700 Sobic009G088700--Sobic003G078400 Sobic003G091550 Sobic003G091550 Sobic009G088700--Sobic003G091550 Sobic006G068200 Sobic006G068200 Sobic009G088700--Sobic006G068200 Sobic004G313200 Sobic004G313200 Sobic009G088700--Sobic004G313200 Sobic009G088700--Sobic006G122300 Sobic007G106300--Sobic003G078400 Sobic008G041900 Sobic008G041900 Sobic007G106300--Sobic008G041900 Sobic003G026900 Sobic003G026900 Sobic007G106300--Sobic003G026900 Sobic007G106300--Sobic006G122300 Sobic001G541400 Sobic001G541400 Sobic007G106300--Sobic001G541400 Sobic005G018050 Sobic005G018050 Sobic007G106300--Sobic005G018050 Sobic004G145300 Sobic004G145300 Sobic007G106300--Sobic004G145300 Sobic001G085200 Sobic001G085200 Sobic007G106300--Sobic001G085200 Sobic003G224700 Sobic003G224700 Sobic007G106300--Sobic003G224700 Sobic002G220700--Sobic009G088700 Sobic002G220700--Sobic003G091550 Sobic002G220700--Sobic001G015700 Sobic002G220700--Sobic006G122300 Sobic004G072900 Sobic004G072900 Sobic002G220700--Sobic004G072900 Sobic002G220700--Sobic003G078400 Sobic003G274000 Sobic003G274000 Sobic002G220700--Sobic003G274000 Sobic003G317700 Sobic003G317700 Sobic002G220700--Sobic003G317700 Sobic001G123300 Sobic001G123300 Sobic002G220700--Sobic001G123300 Sobic001G074000 Sobic001G074000 Sobic009G129700--Sobic001G074000 Sobic001G298800 Sobic001G298800 Sobic009G129700--Sobic001G298800 Sobic001G522300 Sobic001G522300 Sobic009G129700--Sobic001G522300 Sobic009G129700--Sobic003G019900 Sobic009G129700--Sobic005G104100 Sobic009G129700--Sobic003G070600 Sobic003G283400 Sobic003G283400 Sobic009G129700--Sobic003G283400 Sobic001G199400 Sobic001G199400 Sobic009G129700--Sobic001G199400 Sobic003G360700 Sobic003G360700 Sobic009G129700--Sobic003G360700 Sobic001G083500--Sobic004G313200 Sobic002G335900 Sobic002G335900 Sobic001G083500--Sobic002G335900 Sobic001G083500--Sobic009G088700 Sobic002G337600 Sobic002G337600 Sobic001G083500--Sobic002G337600 Sobic001G083500--Sobic001G074000 Sobic002G160800 Sobic002G160800 Sobic001G083500--Sobic002G160800 Sobic001G452900 Sobic001G452900 Sobic001G083500--Sobic001G452900 Sobic001G083500--Sobic003G100700 Sobic001G083500--Sobic001G199400 Sobic003G100700--Sobic001G074000 Sobic004G267600 Sobic004G267600 Sobic003G100700--Sobic004G267600 Sobic003G100700--Sobic009G088700 Sobic002G284100 Sobic002G284100 Sobic003G100700--Sobic002G284100 Sobic003G100700--Sobic001G083500 Sobic003G100700--Sobic002G335900 Sobic001G123100 Sobic001G123100 Sobic003G100700--Sobic001G123100 Sobic004G234500 Sobic004G234500 Sobic003G100700--Sobic004G234500 Sobic004G246500 Sobic004G246500 Sobic003G100700--Sobic004G246500
Octagon: transcription factors


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