Gene annotation
| Transcriptome id | Sobic.001G019700.1 |
|---|---|
| Synonym | Sb01g001900 |
| Functional annotation | MATE efflux family protein, putative, expressed |
| UniProt | C5WT35 |
| Pfam | PF01554 |
| Panther DB | PTHR11206 PTHR11206:SF75 |
| NCBI CDD | KOG1347; Uncharacterized membrane protein, predicted efflux pump |
| KEGG Orthology | K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family |
| Gene Ontology | GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport |
Orthologs (automatic annotation)
| TAIR | AT1G71870 : MATE efflux family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g62270.1 : MATE efflux family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a056760 , Zm00025a010158 , Zm00025a021500 , Zm00025a016364 |
| Brachypodium | KQK12236 , PNT77806 , KQJ91113 , KQK00755 , KQK22742 , KQK22741 , PNT77807 |
| Barley | HORVU0Hr1G025760.4 , HORVU0Hr1G025760.5 , HORVU0Hr1G025760.2 , HORVU0Hr1G025760.3 , HORVU0Hr1G025760.1 , HORVU6Hr1G065390.1 , HORVU6Hr1G065390.3 , HORVU6Hr1G065390.2 , HORVU6Hr1G065390.5 , HORVU6Hr1G065390.4 , HORVU5Hr1G118820.3 , HORVU5Hr1G118820.2 , HORVU5Hr1G118820.1 , HORVU5Hr1G118820.4 |
| Wheat | TraesCS4A02G350200 , TraesCS5B02G522900 , TraesCS5D02G521600 , TraesCS5D02G521600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G052600 | universal stress protein domain containing protein, putative, expressed | - |
| 2 | Sobic.002G346300 | - | - |
| 3 | Sobic.001G296700 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11251: histone H2A |
| 4 | Sobic.001G197800 | - | - |
| 5 | Sobic.010G059800 | hydroxylase, putative, expressed | - |
| 6 | Sobic.010G135200 | - | - |
| 7 | Sobic.008G075350 | - | - |
| 8 | Sobic.001G155500 | transketolase, putative, expressed | K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit |
| 9 | Sobic.001G336200 | "Grain Length3.2(Ortholog in rice:Adamski et al., 2009(PubMedID : 31659842)@cytochrome P450, putative, expressed | - |
| 10 | Sobic.009G230000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transcription factor HBP-1b, putative, expressed | - |
| 11 | Sobic.001G261420 | - | - |
| 12 | Sobic.003G156000 | CHIT3 - Chitinase family protein precursor, expressed | K01183: chitinase |
| 13 | Sobic.003G419500 | xylanase inhibitor, putative, expressed | - |
| 14 | Sobic.005G078132 | - | - |
| 15 | Sobic.007G191500 | - | - |
| 16 | Sobic.003G011800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed | K00606: 3-methyl-2-oxobutanoate hydroxymethyltransferase |
| 17 | Sobic.001G386600 | homeobox domain containing protein, expressed | - |
| 18 | Sobic.003G019400 | expressed protein | - |
| 19 | Sobic.006G245500 | down-regulated TF in developmental senescence(PubMedID : 27586543)@AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed | K09285: OVM, AP2-like factor, ANT lineage |
| 20 | Sobic.006G014800 | "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed | K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1 |
Gene co-expression network
Octagon: transcription factors
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