Gene annotation
Transcriptome id Sobic.001G023900.2,Sobic.001G023900.1
Synonym GNC, Sb01g002270, GATA21
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5WTZ1 , A0A1B6QH04
Pfam PF00320
Panther DB PTHR10071 PTHR10071:SF208
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G49300 : GATA transcription factor 16
RAP-DB (Rice) LOC_Os03g61570.2 : expressed protein
MaizeGDB (Corn) Zm00025a008925 , Zm00025a028152
Brachypodium KQK12335 , KQK11831
Barley HORVU6Hr1G093630.3 , HORVU6Hr1G093630.2 , HORVU6Hr1G093630.1 , HORVU5Hr1G116310.5 , HORVU5Hr1G116310.4 , HORVU5Hr1G116310.3 , HORVU5Hr1G116310.2 , HORVU5Hr1G116310.1
Wheat TraesCS4A02G364700 , TraesCS3B02G603900 , TraesCS5B02G508800 , TraesCS3A02G538400 , TraesCS5D02G508800
Populus -


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cDNA sequences
Sobic.001G023900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G135800 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.003G037200 GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.004G269900 "GS2/GL2(Ortholog in rice:Che et al., 2015(PubMedID : 31659888)@growth-regulating factor, putative, expressed -
4 Sobic.006G147900 expressed protein -
5 Sobic.009G127800 BZIP protein, putative, expressed -
6 Sobic.003G350400 thaumatin, putative, expressed -
7 Sobic.001G320000 OsSub61 - Putative Subtilisin homologue, expressed -
8 Sobic.007G050800 abhydrolase domain-containing protein FAM108C1, putative, expressed -
9 Sobic.001G059900 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
10 Sobic.003G387300 ABC-2 type transporter domain containing protein, expressed -
11 Sobic.001G375800 expressed protein -
12 Sobic.007G097100 aspartic proteinase nepenthesin precursor, putative, expressed -
13 Sobic.002G189300 cytochrome P450, putative, expressed -
14 Sobic.006G172000 pectinesterase, putative, expressed -
15 Sobic.009G002200 formin-like protein 1 precursor, putative, expressed -
16 Sobic.002G022600 AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
17 Sobic.002G265200 formin, putative, expressed -
18 Sobic.001G493100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.005G036200 protein of unknown function containing protein, expressed -
20 Sobic.007G160400 ZF-HD homeobox protein, putative, expressed -


Gene co-expression network
sample Sobic001G023900 Sobic001G023900 Sobic006G135800 Sobic006G135800 Sobic001G023900--Sobic006G135800 Sobic003G037200 Sobic003G037200 Sobic001G023900--Sobic003G037200 Sobic004G269900 Sobic004G269900 Sobic001G023900--Sobic004G269900 Sobic006G147900 Sobic006G147900 Sobic001G023900--Sobic006G147900 Sobic009G127800 Sobic009G127800 Sobic001G023900--Sobic009G127800 Sobic003G350400 Sobic003G350400 Sobic001G023900--Sobic003G350400 Sobic001G320000 Sobic001G320000 Sobic001G023900--Sobic001G320000 Sobic007G050800 Sobic007G050800 Sobic001G023900--Sobic007G050800 Sobic001G059900 Sobic001G059900 Sobic001G023900--Sobic001G059900 Sobic001G493100 Sobic001G493100 Sobic006G135800--Sobic001G493100 Sobic010G037901 Sobic010G037901 Sobic006G135800--Sobic010G037901 Sobic006G226000 Sobic006G226000 Sobic006G135800--Sobic006G226000 Sobic006G172000 Sobic006G172000 Sobic006G135800--Sobic006G172000 Sobic009G002200 Sobic009G002200 Sobic006G135800--Sobic009G002200 Sobic005G153000 Sobic005G153000 Sobic006G135800--Sobic005G153000 Sobic007G192200 Sobic007G192200 Sobic006G135800--Sobic007G192200 Sobic009G031800 Sobic009G031800 Sobic006G135800--Sobic009G031800 Sobic007G160400 Sobic007G160400 Sobic006G135800--Sobic007G160400 Sobic003G037200--Sobic004G269900 Sobic006G098400 Sobic006G098400 Sobic003G037200--Sobic006G098400 Sobic002G022600 Sobic002G022600 Sobic003G037200--Sobic002G022600 Sobic003G037200--Sobic001G023900 Sobic001G404000 Sobic001G404000 Sobic003G037200--Sobic001G404000 Sobic001G079600 Sobic001G079600 Sobic003G037200--Sobic001G079600 Sobic003G037200--Sobic006G135800 Sobic002G375900 Sobic002G375900 Sobic003G037200--Sobic002G375900 Sobic001G193900 Sobic001G193900 Sobic003G037200--Sobic001G193900 Sobic004G269900--Sobic002G022600 Sobic004G269900--Sobic006G098400 Sobic002G189300 Sobic002G189300 Sobic004G269900--Sobic002G189300 Sobic004G269900--Sobic003G037200 Sobic009G233600 Sobic009G233600 Sobic004G269900--Sobic009G233600 Sobic004G269900--Sobic001G079600 Sobic006G260600 Sobic006G260600 Sobic004G269900--Sobic006G260600 Sobic002G356700 Sobic002G356700 Sobic004G269900--Sobic002G356700 Sobic010G145200 Sobic010G145200 Sobic004G269900--Sobic010G145200 Sobic004G108400 Sobic004G108400 Sobic006G147900--Sobic004G108400 Sobic002G221400 Sobic002G221400 Sobic006G147900--Sobic002G221400 Sobic004G266800 Sobic004G266800 Sobic006G147900--Sobic004G266800 Sobic004G313900 Sobic004G313900 Sobic006G147900--Sobic004G313900 Sobic004G329000 Sobic004G329000 Sobic006G147900--Sobic004G329000 Sobic003G251700 Sobic003G251700 Sobic006G147900--Sobic003G251700 Sobic002G286100 Sobic002G286100 Sobic006G147900--Sobic002G286100 Sobic009G257900 Sobic009G257900 Sobic006G147900--Sobic009G257900 Sobic006G163600 Sobic006G163600 Sobic006G147900--Sobic006G163600 Sobic006G221300 Sobic006G221300 Sobic009G127800--Sobic006G221300 Sobic009G225500 Sobic009G225500 Sobic009G127800--Sobic009G225500 Sobic001G054700 Sobic001G054700 Sobic009G127800--Sobic001G054700 Sobic006G142500 Sobic006G142500 Sobic009G127800--Sobic006G142500 Sobic008G052300 Sobic008G052300 Sobic009G127800--Sobic008G052300 Sobic002G279400 Sobic002G279400 Sobic009G127800--Sobic002G279400 Sobic007G162400 Sobic007G162400 Sobic009G127800--Sobic007G162400 Sobic002G027600 Sobic002G027600 Sobic009G127800--Sobic002G027600 Sobic005G157300 Sobic005G157300 Sobic009G127800--Sobic005G157300 Sobic002G256900 Sobic002G256900 Sobic003G350400--Sobic002G256900 Sobic006G016700 Sobic006G016700 Sobic003G350400--Sobic006G016700 Sobic007G097100 Sobic007G097100 Sobic003G350400--Sobic007G097100 Sobic004G311600 Sobic004G311600 Sobic003G350400--Sobic004G311600 Sobic006G041700 Sobic006G041700 Sobic003G350400--Sobic006G041700 Sobic004G330200 Sobic004G330200 Sobic003G350400--Sobic004G330200 Sobic002G175200 Sobic002G175200 Sobic003G350400--Sobic002G175200 Sobic001G246600 Sobic001G246600 Sobic003G350400--Sobic001G246600 Sobic004G142400 Sobic004G142400 Sobic003G350400--Sobic004G142400 Sobic001G320000--Sobic007G097100 Sobic001G320000--Sobic007G160400 Sobic001G320000--Sobic001G493100 Sobic010G214800 Sobic010G214800 Sobic001G320000--Sobic010G214800 Sobic001G320000--Sobic009G031800 Sobic001G320000--Sobic006G226000 Sobic002G055800 Sobic002G055800 Sobic001G320000--Sobic002G055800 Sobic001G320000--Sobic006G135800 Sobic001G320000--Sobic004G142400 Sobic007G050800--Sobic009G002200 Sobic007G050800--Sobic006G016700 Sobic008G118100 Sobic008G118100 Sobic007G050800--Sobic008G118100 Sobic007G050800--Sobic006G226000 Sobic002G168000 Sobic002G168000 Sobic007G050800--Sobic002G168000 Sobic007G050800--Sobic005G153000 Sobic007G050800--Sobic006G135800 Sobic007G187700 Sobic007G187700 Sobic007G050800--Sobic007G187700 Sobic009G012600 Sobic009G012600 Sobic007G050800--Sobic009G012600 Sobic001G379500 Sobic001G379500 Sobic001G059900--Sobic001G379500 Sobic009G101100 Sobic009G101100 Sobic001G059900--Sobic009G101100 Sobic003G273800 Sobic003G273800 Sobic001G059900--Sobic003G273800 Sobic001G059900--Sobic009G127800 Sobic003G041700 Sobic003G041700 Sobic001G059900--Sobic003G041700 Sobic005G210600 Sobic005G210600 Sobic001G059900--Sobic005G210600 Sobic005G188400 Sobic005G188400 Sobic001G059900--Sobic005G188400 Sobic002G237700 Sobic002G237700 Sobic001G059900--Sobic002G237700 Sobic004G234500 Sobic004G234500 Sobic001G059900--Sobic004G234500
Octagon: transcription factors


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