Gene annotation
Transcriptome id Sobic.001G086900.1,Sobic.001G086900.2
Synonym ATKCO1, ATTPK1, Sb01g007830, TPK1, KCO1
Functional annotation potassium channel protein, putative, expressed
UniProt A0A1B6QHZ1 , C5X097
Pfam PF07885
Panther DB PTHR11003 PTHR11003:SF137
NCBI CDD -
KEGG Orthology K05389; potassium channel subfamily K, other eukaryote
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G55630 : Outward rectifying potassium channel protein
RAP-DB (Rice) LOC_Os03g54100.2,LOC_Os03g54100.1 : potassium channel protein, putative, expressed
MaizeGDB (Corn) Zm00025a008185
Brachypodium KQK13162 , KQK13163
Barley HORVU5Hr1G095590.7 , HORVU5Hr1G095590.5 , HORVU5Hr1G095590.3 , HORVU5Hr1G095590.2 , HORVU5Hr1G095590.1 , HORVU5Hr1G095590.9 , HORVU5Hr1G095590.8 , HORVU5Hr1G095540.4 , HORVU5Hr1G095540.6 , HORVU5Hr1G095540.7 , HORVU5Hr1G095540.1 , HORVU5Hr1G095540.2 , HORVU5Hr1G095540.3 , HORVU5Hr1G095540.8 , HORVU5Hr1G095540.9 , HORVU5Hr1G095550.2 , HORVU5Hr1G095550.1 , HORVU5Hr1G095540.5 , HORVU5Hr1G095590.6 , HORVU5Hr1G095540.16 , HORVU5Hr1G095540.14 , HORVU5Hr1G095590.4 , HORVU5Hr1G095540.12 , HORVU5Hr1G095540.13 , HORVU5Hr1G095540.10 , HORVU5Hr1G095540.15 , HORVU5Hr1G095540.11
Wheat TraesCS5B02G396400 , TraesCS5D02G401200 , TraesCS5D02G401200
Populus -


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cDNA sequences
Sobic.001G086900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
2 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
3 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
4 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
5 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
6 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -
7 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
8 Sobic.006G141700 OsGrx_C2.2 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
9 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
10 Sobic.001G247600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed K10046: GDP-D-mannose 3', 5'-epimerase
11 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
12 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
13 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
14 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
15 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
16 Sobic.001G390300 OsCam1-1 - Calmodulin, expressed K02183: calmodulin
17 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
18 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
19 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
20 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e


Gene co-expression network
sample Sobic001G086900 Sobic001G086900 Sobic001G018900 Sobic001G018900 Sobic001G086900--Sobic001G018900 Sobic002G414700 Sobic002G414700 Sobic001G086900--Sobic002G414700 Sobic001G036900 Sobic001G036900 Sobic001G086900--Sobic001G036900 Sobic001G295200 Sobic001G295200 Sobic001G086900--Sobic001G295200 Sobic009G215200 Sobic009G215200 Sobic001G086900--Sobic009G215200 Sobic003G429000 Sobic003G429000 Sobic001G086900--Sobic003G429000 Sobic007G018300 Sobic007G018300 Sobic001G086900--Sobic007G018300 Sobic006G141700 Sobic006G141700 Sobic001G086900--Sobic006G141700 Sobic001G402050 Sobic001G402050 Sobic001G086900--Sobic001G402050 Sobic006G116700 Sobic006G116700 Sobic001G018900--Sobic006G116700 Sobic001G018900--Sobic009G215200 Sobic009G050300 Sobic009G050300 Sobic001G018900--Sobic009G050300 Sobic001G018900--Sobic001G036900 Sobic007G197800 Sobic007G197800 Sobic001G018900--Sobic007G197800 Sobic002G375100 Sobic002G375100 Sobic001G018900--Sobic002G375100 Sobic001G130301 Sobic001G130301 Sobic001G018900--Sobic001G130301 Sobic001G016400 Sobic001G016400 Sobic001G018900--Sobic001G016400 Sobic003G408100 Sobic003G408100 Sobic001G018900--Sobic003G408100 Sobic004G271400 Sobic004G271400 Sobic002G414700--Sobic004G271400 Sobic002G414700--Sobic001G402050 Sobic001G508900 Sobic001G508900 Sobic002G414700--Sobic001G508900 Sobic007G184600 Sobic007G184600 Sobic002G414700--Sobic007G184600 Sobic001G175300 Sobic001G175300 Sobic002G414700--Sobic001G175300 Sobic001G493001 Sobic001G493001 Sobic002G414700--Sobic001G493001 Sobic003G078200 Sobic003G078200 Sobic002G414700--Sobic003G078200 Sobic004G055100 Sobic004G055100 Sobic002G414700--Sobic004G055100 Sobic006G067800 Sobic006G067800 Sobic002G414700--Sobic006G067800 Sobic001G036900--Sobic001G018900 Sobic001G036900--Sobic006G116700 Sobic001G036900--Sobic009G215200 Sobic001G036900--Sobic009G050300 Sobic001G403500 Sobic001G403500 Sobic001G036900--Sobic001G403500 Sobic001G036900--Sobic001G016400 Sobic001G036900--Sobic007G197800 Sobic001G036900--Sobic003G408100 Sobic001G054900 Sobic001G054900 Sobic001G036900--Sobic001G054900 Sobic001G295200--Sobic006G141700 Sobic001G295200--Sobic001G018900 Sobic001G295200--Sobic006G116700 Sobic001G361600 Sobic001G361600 Sobic001G295200--Sobic001G361600 Sobic005G113300 Sobic005G113300 Sobic001G295200--Sobic005G113300 Sobic001G295200--Sobic003G078200 Sobic001G295200--Sobic001G036900 Sobic001G295200--Sobic007G197800 Sobic001G295200--Sobic009G215200 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic009G215200--Sobic001G130301 Sobic002G081600 Sobic002G081600 Sobic009G215200--Sobic002G081600 Sobic009G215200--Sobic001G018900 Sobic009G215200--Sobic007G197800 Sobic009G215200--Sobic001G403500 Sobic009G215200--Sobic001G016400 Sobic001G374700 Sobic001G374700 Sobic009G215200--Sobic001G374700 Sobic003G037800 Sobic003G037800 Sobic003G429000--Sobic003G037800 Sobic005G018700 Sobic005G018700 Sobic003G429000--Sobic005G018700 Sobic001G050100 Sobic001G050100 Sobic003G429000--Sobic001G050100 Sobic001G389000 Sobic001G389000 Sobic003G429000--Sobic001G389000 Sobic002G329000 Sobic002G329000 Sobic003G429000--Sobic002G329000 Sobic002G245100 Sobic002G245100 Sobic003G429000--Sobic002G245100 Sobic009G159400 Sobic009G159400 Sobic003G429000--Sobic009G159400 Sobic003G429000--Sobic007G184600 Sobic002G175100 Sobic002G175100 Sobic003G429000--Sobic002G175100 Sobic010G230700 Sobic010G230700 Sobic007G018300--Sobic010G230700 Sobic005G019700 Sobic005G019700 Sobic007G018300--Sobic005G019700 Sobic007G018300--Sobic009G215200 Sobic007G018300--Sobic009G050300 Sobic007G018300--Sobic006G116700 Sobic007G018300--Sobic001G016400 Sobic007G019000 Sobic007G019000 Sobic007G018300--Sobic007G019000 Sobic007G018300--Sobic007G197800 Sobic007G018300--Sobic001G054900 Sobic006G141700--Sobic001G295200 Sobic009G188000 Sobic009G188000 Sobic006G141700--Sobic009G188000 Sobic004G141100 Sobic004G141100 Sobic006G141700--Sobic004G141100 Sobic006G141700--Sobic002G375100 Sobic006G141700--Sobic006G116700 Sobic006G141700--Sobic001G018900 Sobic003G426400 Sobic003G426400 Sobic006G141700--Sobic003G426400 Sobic001G313600 Sobic001G313600 Sobic006G141700--Sobic001G313600 Sobic003G007600 Sobic003G007600 Sobic006G141700--Sobic003G007600 Sobic002G200600 Sobic002G200600 Sobic001G402050--Sobic002G200600 Sobic001G402050--Sobic001G374700 Sobic001G402050--Sobic007G184600 Sobic001G402050--Sobic007G197800 Sobic001G402050--Sobic006G067800 Sobic001G402050--Sobic001G016400 Sobic001G402050--Sobic009G215200 Sobic001G402050--Sobic001G130301 Sobic001G402050--Sobic001G493001
Octagon: transcription factors


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