Gene annotation
Transcriptome id Sobic.001G151000.1,Sobic.001G151000.2
Synonym Sb01g013100, CAT2
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
amino acid permease, putative, expressed
UniProt C5WR23 , A0A1Z5S5P6
Pfam PF13906 PF13520
Panther DB PTHR11785 PTHR11785:SF411
NCBI CDD KOG1286; Amino acid transporters
KEGG Orthology K13863; SLC7A1, solute carrier family 7 (cationic amino acid transporter), member 1
Gene Ontology GO:0016020; membrane GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT1G58030 : cationic amino acid transporter 2
RAP-DB (Rice) LOC_Os03g45170.1 : amino acid permease, putative, expressed
MaizeGDB (Corn) Zm00025a026019 , Zm00025a017215 , Zm00025a007573
Brachypodium KQK13928
Barley HORVU5Hr1G006900.20 , HORVU4Hr1G002020.2 , HORVU4Hr1G002020.3 , HORVU4Hr1G002020.1 , HORVU4Hr1G002020.6 , HORVU4Hr1G002020.7 , HORVU4Hr1G002020.4 , HORVU4Hr1G002020.5 , HORVU4Hr1G002020.8 , HORVU4Hr1G002020.9 , HORVU5Hr1G006900.19 , HORVU5Hr1G006900.12 , HORVU5Hr1G006900.13 , HORVU5Hr1G006900.10 , HORVU5Hr1G006900.11 , HORVU5Hr1G006900.16 , HORVU5Hr1G006900.17 , HORVU5Hr1G006900.14 , HORVU5Hr1G006900.15 , HORVU5Hr1G006900.18 , HORVU5Hr1G006900.8 , HORVU5Hr1G006900.9 , HORVU5Hr1G006900.1 , HORVU5Hr1G006900.2 , HORVU5Hr1G006900.3 , HORVU5Hr1G006900.4 , HORVU5Hr1G006900.5 , HORVU5Hr1G006900.6 , HORVU5Hr1G006900.7 , HORVU4Hr1G002020.10 , HORVU4Hr1G002020.11 , HORVU4Hr1G002020.12 , HORVU4Hr1G002020.13 , HORVU4Hr1G002020.14 , HORVU4Hr1G002020.15 , HORVU4Hr1G002020.16 , HORVU4Hr1G002020.17
Wheat TraesCS4B02G013800 , TraesCS5B02G023300 , TraesCS4D02G011700 , TraesCS4A02G299800 , TraesCS5D02G031800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G409500 lipase precursor, putative, expressed -
2 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
3 Sobic.003G317400 Diacylglycerol kinase DGK (Os)(PubMedID : 27208977)@diacylglycerol kinase, putative, expressed K04718: sphingosine kinase
4 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
5 Sobic.007G041400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
6 Sobic.003G138200 expressed protein -
7 Sobic.002G415900 acyl-CoA dehydrogenase family member 10, putative, expressed K00249: ACADM, acyl-CoA dehydrogenase
8 Sobic.002G215800 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
9 Sobic.003G257100 YT521-B-like family domain containing protein, expressed -
10 Sobic.005G151700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
11 Sobic.002G352800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactose permease-related, putative, expressed -
12 Sobic.001G089000 periplasmic beta-glucosidase precursor, putative, expressed K01188: beta-glucosidase
13 Sobic.002G209000 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
14 Sobic.001G265600 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
15 Sobic.002G155400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed -
16 Sobic.006G080750 - -
17 Sobic.010G098100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
18 Sobic.006G214200 aminotransferase, putative, expressed K16871: 4-aminobutyrate---pyruvate transaminase
19 Sobic.001G251900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
20 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase


Gene co-expression network
sample Sobic001G151000 Sobic001G151000 Sobic002G409500 Sobic002G409500 Sobic001G151000--Sobic002G409500 Sobic001G512800 Sobic001G512800 Sobic001G151000--Sobic001G512800 Sobic003G317400 Sobic003G317400 Sobic001G151000--Sobic003G317400 Sobic009G211400 Sobic009G211400 Sobic001G151000--Sobic009G211400 Sobic007G041400 Sobic007G041400 Sobic001G151000--Sobic007G041400 Sobic003G138200 Sobic003G138200 Sobic001G151000--Sobic003G138200 Sobic002G415900 Sobic002G415900 Sobic001G151000--Sobic002G415900 Sobic002G215800 Sobic002G215800 Sobic001G151000--Sobic002G215800 Sobic003G257100 Sobic003G257100 Sobic001G151000--Sobic003G257100 Sobic009G029600 Sobic009G029600 Sobic002G409500--Sobic009G029600 Sobic003G219600 Sobic003G219600 Sobic002G409500--Sobic003G219600 Sobic002G409500--Sobic009G211400 Sobic001G280200 Sobic001G280200 Sobic002G409500--Sobic001G280200 Sobic001G249300 Sobic001G249300 Sobic002G409500--Sobic001G249300 Sobic002G409500--Sobic003G257100 Sobic004G255000 Sobic004G255000 Sobic002G409500--Sobic004G255000 Sobic002G409500--Sobic002G215800 Sobic003G259200 Sobic003G259200 Sobic002G409500--Sobic003G259200 Sobic001G512800--Sobic003G138200 Sobic002G322900 Sobic002G322900 Sobic001G512800--Sobic002G322900 Sobic010G206000 Sobic010G206000 Sobic001G512800--Sobic010G206000 Sobic004G246200 Sobic004G246200 Sobic001G512800--Sobic004G246200 Sobic001G512800--Sobic002G409500 Sobic001G512800--Sobic009G029600 Sobic010G248900 Sobic010G248900 Sobic001G512800--Sobic010G248900 Sobic009G054500 Sobic009G054500 Sobic001G512800--Sobic009G054500 Sobic005G079900 Sobic005G079900 Sobic001G512800--Sobic005G079900 Sobic003G317400--Sobic009G211400 Sobic002G352800 Sobic002G352800 Sobic003G317400--Sobic002G352800 Sobic010G043400 Sobic010G043400 Sobic003G317400--Sobic010G043400 Sobic004G124200 Sobic004G124200 Sobic003G317400--Sobic004G124200 Sobic009G133500 Sobic009G133500 Sobic003G317400--Sobic009G133500 Sobic001G111150 Sobic001G111150 Sobic003G317400--Sobic001G111150 Sobic008G017800 Sobic008G017800 Sobic003G317400--Sobic008G017800 Sobic010G130200 Sobic010G130200 Sobic003G317400--Sobic010G130200 Sobic003G317400--Sobic002G215800 Sobic009G211400--Sobic003G219600 Sobic010G107000 Sobic010G107000 Sobic009G211400--Sobic010G107000 Sobic009G211400--Sobic009G029600 Sobic009G211400--Sobic003G138200 Sobic004G260000 Sobic004G260000 Sobic009G211400--Sobic004G260000 Sobic009G211400--Sobic002G215800 Sobic009G211400--Sobic009G054500 Sobic009G193700 Sobic009G193700 Sobic009G211400--Sobic009G193700 Sobic005G018500 Sobic005G018500 Sobic009G211400--Sobic005G018500 Sobic001G488500 Sobic001G488500 Sobic007G041400--Sobic001G488500 Sobic007G041400--Sobic005G079900 Sobic004G101900 Sobic004G101900 Sobic007G041400--Sobic004G101900 Sobic007G041400--Sobic010G107000 Sobic002G215700 Sobic002G215700 Sobic007G041400--Sobic002G215700 Sobic003G329400 Sobic003G329400 Sobic007G041400--Sobic003G329400 Sobic007G041400--Sobic009G211400 Sobic001G427100 Sobic001G427100 Sobic007G041400--Sobic001G427100 Sobic003G005600 Sobic003G005600 Sobic007G041400--Sobic003G005600 Sobic003G138200--Sobic001G249300 Sobic009G226300 Sobic009G226300 Sobic003G138200--Sobic009G226300 Sobic007G187300 Sobic007G187300 Sobic003G138200--Sobic007G187300 Sobic001G150200 Sobic001G150200 Sobic003G138200--Sobic001G150200 Sobic003G138200--Sobic009G054500 Sobic003G138200--Sobic009G211400 Sobic003G138200--Sobic002G215700 Sobic003G138200--Sobic004G260000 Sobic001G325200 Sobic001G325200 Sobic003G138200--Sobic001G325200 Sobic007G068100 Sobic007G068100 Sobic002G415900--Sobic007G068100 Sobic001G474500 Sobic001G474500 Sobic002G415900--Sobic001G474500 Sobic009G057300 Sobic009G057300 Sobic002G415900--Sobic009G057300 Sobic003G388251 Sobic003G388251 Sobic002G415900--Sobic003G388251 Sobic002G415900--Sobic001G111150 Sobic001G322700 Sobic001G322700 Sobic002G415900--Sobic001G322700 Sobic003G200100 Sobic003G200100 Sobic002G415900--Sobic003G200100 Sobic003G226200 Sobic003G226200 Sobic002G415900--Sobic003G226200 Sobic002G415900--Sobic004G124200 Sobic002G215800--Sobic009G029600 Sobic002G215800--Sobic009G211400 Sobic002G215800--Sobic003G219600 Sobic002G215800--Sobic004G255000 Sobic002G215800--Sobic001G249300 Sobic002G215800--Sobic001G280200 Sobic002G215800--Sobic003G138200 Sobic002G215800--Sobic004G260000 Sobic002G215800--Sobic010G107000 Sobic003G257100--Sobic009G029600 Sobic006G199000 Sobic006G199000 Sobic003G257100--Sobic006G199000 Sobic008G153400 Sobic008G153400 Sobic003G257100--Sobic008G153400 Sobic003G398100 Sobic003G398100 Sobic003G257100--Sobic003G398100 Sobic003G257100--Sobic010G107000 Sobic003G257100--Sobic002G352800 Sobic003G257100--Sobic009G211400 Sobic006G030700 Sobic006G030700 Sobic003G257100--Sobic006G030700 Sobic003G257100--Sobic002G409500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.