Gene annotation
Transcriptome id Sobic.001G165200.1
Synonym REM39, VRN1, Sb01g014420
Functional annotation B3 DNA binding domain containing protein
UniProt A0A1B6QJB4
Pfam PF02362
Panther DB PTHR31920 PTHR31920:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G18990 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os03g42410.1 : B3 DNA binding domain containing protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G164700 ZOS9-04 - C2H2 zinc finger protein, expressed -
2 Sobic.010G096200 expressed protein -
3 Sobic.003G100400 TOO MANY MOUTHS precursor, putative, expressed -
4 Sobic.002G045200 protein kinase, putative, expressed -
5 Sobic.006G233600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
6 Sobic.006G241800 receptor kinase, putative, expressed -
7 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
8 Sobic.006G032800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
9 Sobic.010G107200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
10 Sobic.010G077700 ZOS6-02 - C2H2 zinc finger protein, expressed -
11 Sobic.010G165100 expressed protein -
12 Sobic.001G164500 MYB family transcription factor, putative, expressed -
13 Sobic.002G270900 Expressed in several layers of cells in the chalaza adjacent to the nucellar epidermis(PubMedID : 25081518)@homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
14 Sobic.001G389600 expressed protein -
15 Sobic.006G276900 expressed protein -
16 Sobic.001G074100 kinesin motor domain containing protein, putative, expressed K10401: kinesin family member 18/19
17 Sobic.003G291000 protein kinase family protein, putative, expressed -
18 Sobic.003G041801 - -
19 Sobic.001G478100 aspartic proteinase nepenthesin precursor, putative, expressed -
20 Sobic.001G381100 receptor-like protein kinase precursor, putative, expressed -


Gene co-expression network
sample Sobic001G165200 Sobic001G165200 Sobic002G164700 Sobic002G164700 Sobic001G165200--Sobic002G164700 Sobic010G096200 Sobic010G096200 Sobic001G165200--Sobic010G096200 Sobic003G100400 Sobic003G100400 Sobic001G165200--Sobic003G100400 Sobic002G045200 Sobic002G045200 Sobic001G165200--Sobic002G045200 Sobic006G233600 Sobic006G233600 Sobic001G165200--Sobic006G233600 Sobic006G241800 Sobic006G241800 Sobic001G165200--Sobic006G241800 Sobic003G018700 Sobic003G018700 Sobic001G165200--Sobic003G018700 Sobic006G032800 Sobic006G032800 Sobic001G165200--Sobic006G032800 Sobic010G107200 Sobic010G107200 Sobic001G165200--Sobic010G107200 Sobic002G164700--Sobic006G241800 Sobic002G164700--Sobic003G018700 Sobic002G164700--Sobic006G032800 Sobic003G291000 Sobic003G291000 Sobic002G164700--Sobic003G291000 Sobic002G164700--Sobic010G107200 Sobic010G165100 Sobic010G165100 Sobic002G164700--Sobic010G165100 Sobic009G154100 Sobic009G154100 Sobic002G164700--Sobic009G154100 Sobic001G389600 Sobic001G389600 Sobic002G164700--Sobic001G389600 Sobic002G164700--Sobic006G233600 Sobic001G379100 Sobic001G379100 Sobic010G096200--Sobic001G379100 Sobic005G147800 Sobic005G147800 Sobic010G096200--Sobic005G147800 Sobic010G096200--Sobic001G389600 Sobic001G164500 Sobic001G164500 Sobic010G096200--Sobic001G164500 Sobic007G142300 Sobic007G142300 Sobic010G096200--Sobic007G142300 Sobic010G096200--Sobic010G107200 Sobic010G096200--Sobic010G165100 Sobic010G096200--Sobic006G233600 Sobic010G096200--Sobic002G164700 Sobic001G135600 Sobic001G135600 Sobic003G100400--Sobic001G135600 Sobic010G020600 Sobic010G020600 Sobic003G100400--Sobic010G020600 Sobic001G075700 Sobic001G075700 Sobic003G100400--Sobic001G075700 Sobic004G302700 Sobic004G302700 Sobic003G100400--Sobic004G302700 Sobic008G042200 Sobic008G042200 Sobic003G100400--Sobic008G042200 Sobic009G141300 Sobic009G141300 Sobic003G100400--Sobic009G141300 Sobic003G366000 Sobic003G366000 Sobic003G100400--Sobic003G366000 Sobic001G381100 Sobic001G381100 Sobic003G100400--Sobic001G381100 Sobic006G110850 Sobic006G110850 Sobic003G100400--Sobic006G110850 Sobic002G045200--Sobic001G389600 Sobic010G211800 Sobic010G211800 Sobic002G045200--Sobic010G211800 Sobic001G074100 Sobic001G074100 Sobic002G045200--Sobic001G074100 Sobic002G045200--Sobic010G165100 Sobic002G045200--Sobic006G241800 Sobic001G522300 Sobic001G522300 Sobic002G045200--Sobic001G522300 Sobic002G362700 Sobic002G362700 Sobic002G045200--Sobic002G362700 Sobic002G311000 Sobic002G311000 Sobic002G045200--Sobic002G311000 Sobic002G142500 Sobic002G142500 Sobic002G045200--Sobic002G142500 Sobic005G196500 Sobic005G196500 Sobic006G233600--Sobic005G196500 Sobic006G233600--Sobic010G107200 Sobic001G478100 Sobic001G478100 Sobic006G233600--Sobic001G478100 Sobic005G209900 Sobic005G209900 Sobic006G233600--Sobic005G209900 Sobic006G233600--Sobic006G032800 Sobic006G001400 Sobic006G001400 Sobic006G233600--Sobic006G001400 Sobic006G233600--Sobic007G142300 Sobic006G233600--Sobic009G154100 Sobic007G012800 Sobic007G012800 Sobic006G233600--Sobic007G012800 Sobic006G241800--Sobic003G291000 Sobic006G241800--Sobic003G018700 Sobic004G317200 Sobic004G317200 Sobic006G241800--Sobic004G317200 Sobic004G164700 Sobic004G164700 Sobic006G241800--Sobic004G164700 Sobic010G024500 Sobic010G024500 Sobic006G241800--Sobic010G024500 Sobic006G241800--Sobic002G311000 Sobic006G241800--Sobic010G020600 Sobic006G241800--Sobic001G381100 Sobic006G241800--Sobic001G074100 Sobic003G018700--Sobic010G020600 Sobic003G018700--Sobic006G241800 Sobic004G248100 Sobic004G248100 Sobic003G018700--Sobic004G248100 Sobic003G018700--Sobic002G164700 Sobic003G018700--Sobic001G381100 Sobic003G018700--Sobic004G317200 Sobic003G018700--Sobic006G032800 Sobic006G044200 Sobic006G044200 Sobic003G018700--Sobic006G044200 Sobic003G018700--Sobic001G074100 Sobic006G032800--Sobic006G044200 Sobic006G032800--Sobic010G107200 Sobic005G188500 Sobic005G188500 Sobic006G032800--Sobic005G188500 Sobic006G032800--Sobic006G233600 Sobic006G032800--Sobic003G018700 Sobic006G032800--Sobic009G154100 Sobic006G032800--Sobic001G389600 Sobic006G032800--Sobic001G478100 Sobic006G032800--Sobic007G012800 Sobic010G107200--Sobic005G209900 Sobic010G107200--Sobic005G196500 Sobic010G107200--Sobic006G233600 Sobic010G107200--Sobic009G154100 Sobic010G107200--Sobic006G032800 Sobic010G107200--Sobic007G142300 Sobic010G107200--Sobic001G389600 Sobic010G107200--Sobic001G478100 Sobic010G107200--Sobic005G147800
Octagon: transcription factors


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