Gene annotation
Transcriptome id Sobic.001G165500.5,Sobic.001G165500.3,Sobic.001G165500.4,Sobic.001G165500.2
Synonym
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt A0A1B6QJB2
Pfam PF02362
Panther DB PTHR31391 PTHR31391:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT4G33280 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os03g42280.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS3D02G136500 , TraesCS3A02G310600 , TraesCS4A02G242300 , TraesCS4D02G071700 , TraesCS4B02G072900 , TraesCS3B02G153600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G116000 Glycerophosphoryl diester phosphodiesterase family protein (Os)(PubMedID : 27208977)@glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
2 Sobic.003G332300 AP2 domain containing protein, expressed -
3 Sobic.004G184600 - -
4 Sobic.009G043800 SbDFR4 expression was not detectable in the seedlings of either sorghum cultivar under our experimental conditions.(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
5 Sobic.003G198080 - -
6 Sobic.004G221800 DUF584 domain containing protein, putative, expressed -
7 Sobic.010G206501 - -
8 Sobic.001G064400 expressed protein -
9 Sobic.001G311400 - -
10 Sobic.002G309000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
11 Sobic.002G191450 - -
12 Sobic.001G177400 frigida, putative, expressed -
13 Sobic.002G114200 GAGA-binding protein, putative, expressed -
14 Sobic.008G088800 expressed protein -
15 Sobic.010G246300 Zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.001G274100 OsSub54 - Putative Subtilisin homologue, expressed -
17 Sobic.007G157600 expressed protein -
18 Sobic.001G477500 - -
19 Sobic.007G121200 YDG/SRA domain containing protein, expressed -
20 Sobic.003G092400 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1


Gene co-expression network
sample Sobic001G165500 Sobic001G165500 Sobic006G116000 Sobic006G116000 Sobic001G165500--Sobic006G116000 Sobic003G332300 Sobic003G332300 Sobic001G165500--Sobic003G332300 Sobic004G184600 Sobic004G184600 Sobic001G165500--Sobic004G184600 Sobic009G043800 Sobic009G043800 Sobic001G165500--Sobic009G043800 Sobic003G198080 Sobic003G198080 Sobic001G165500--Sobic003G198080 Sobic004G221800 Sobic004G221800 Sobic001G165500--Sobic004G221800 Sobic010G206501 Sobic010G206501 Sobic001G165500--Sobic010G206501 Sobic001G064400 Sobic001G064400 Sobic001G165500--Sobic001G064400 Sobic001G311400 Sobic001G311400 Sobic001G165500--Sobic001G311400 Sobic010G247000 Sobic010G247000 Sobic006G116000--Sobic010G247000 Sobic003G002000 Sobic003G002000 Sobic006G116000--Sobic003G002000 Sobic006G014400 Sobic006G014400 Sobic006G116000--Sobic006G014400 Sobic003G088600 Sobic003G088600 Sobic006G116000--Sobic003G088600 Sobic009G136000 Sobic009G136000 Sobic006G116000--Sobic009G136000 Sobic008G137700 Sobic008G137700 Sobic006G116000--Sobic008G137700 Sobic002G205000 Sobic002G205000 Sobic006G116000--Sobic002G205000 Sobic001G175100 Sobic001G175100 Sobic006G116000--Sobic001G175100 Sobic009G243000 Sobic009G243000 Sobic006G116000--Sobic009G243000 Sobic004G055901 Sobic004G055901 Sobic003G332300--Sobic004G055901 Sobic010G192200 Sobic010G192200 Sobic003G332300--Sobic010G192200 Sobic003G332300--Sobic004G221800 Sobic003G165401 Sobic003G165401 Sobic003G332300--Sobic003G165401 Sobic003G137000 Sobic003G137000 Sobic003G332300--Sobic003G137000 Sobic002G057700 Sobic002G057700 Sobic003G332300--Sobic002G057700 Sobic008G140500 Sobic008G140500 Sobic003G332300--Sobic008G140500 Sobic007G072700 Sobic007G072700 Sobic003G332300--Sobic007G072700 Sobic001G308900 Sobic001G308900 Sobic003G332300--Sobic001G308900 Sobic010G034700 Sobic010G034700 Sobic004G184600--Sobic010G034700 Sobic002G059700 Sobic002G059700 Sobic004G184600--Sobic002G059700 Sobic001G209550 Sobic001G209550 Sobic004G184600--Sobic001G209550 Sobic006G147101 Sobic006G147101 Sobic004G184600--Sobic006G147101 Sobic002G049750 Sobic002G049750 Sobic004G184600--Sobic002G049750 Sobic001G230600 Sobic001G230600 Sobic004G184600--Sobic001G230600 Sobic004G184600--Sobic009G043800 Sobic007G157600 Sobic007G157600 Sobic004G184600--Sobic007G157600 Sobic002G347850 Sobic002G347850 Sobic004G184600--Sobic002G347850 Sobic009G043800--Sobic001G064400 Sobic002G191450 Sobic002G191450 Sobic009G043800--Sobic002G191450 Sobic006G037500 Sobic006G037500 Sobic009G043800--Sobic006G037500 Sobic009G043800--Sobic004G221800 Sobic002G114200 Sobic002G114200 Sobic009G043800--Sobic002G114200 Sobic009G019400 Sobic009G019400 Sobic009G043800--Sobic009G019400 Sobic003G229900 Sobic003G229900 Sobic009G043800--Sobic003G229900 Sobic007G007100 Sobic007G007100 Sobic009G043800--Sobic007G007100 Sobic006G049633 Sobic006G049633 Sobic009G043800--Sobic006G049633 Sobic003G198016 Sobic003G198016 Sobic003G198080--Sobic003G198016 Sobic001G177400 Sobic001G177400 Sobic003G198080--Sobic001G177400 Sobic010G237800 Sobic010G237800 Sobic003G198080--Sobic010G237800 Sobic003G198080--Sobic006G116000 Sobic008G022200 Sobic008G022200 Sobic003G198080--Sobic008G022200 Sobic003G072500 Sobic003G072500 Sobic003G198080--Sobic003G072500 Sobic003G282700 Sobic003G282700 Sobic003G198080--Sobic003G282700 Sobic010G113400 Sobic010G113400 Sobic003G198080--Sobic010G113400 Sobic009G250600 Sobic009G250600 Sobic003G198080--Sobic009G250600 Sobic004G221800--Sobic009G043800 Sobic004G221800--Sobic001G064400 Sobic004G221800--Sobic002G191450 Sobic004G221800--Sobic003G229900 Sobic004G221800--Sobic002G114200 Sobic004G221800--Sobic007G007100 Sobic004G221800--Sobic006G049633 Sobic004G221800--Sobic006G037500 Sobic004G221800--Sobic009G019400 Sobic008G102466 Sobic008G102466 Sobic010G206501--Sobic008G102466 Sobic002G382200 Sobic002G382200 Sobic010G206501--Sobic002G382200 Sobic003G155700 Sobic003G155700 Sobic010G206501--Sobic003G155700 Sobic002G344800 Sobic002G344800 Sobic010G206501--Sobic002G344800 Sobic010G143666 Sobic010G143666 Sobic010G206501--Sobic010G143666 Sobic010G246300 Sobic010G246300 Sobic010G206501--Sobic010G246300 Sobic002G202050 Sobic002G202050 Sobic010G206501--Sobic002G202050 Sobic001G064400--Sobic002G191450 Sobic001G064400--Sobic009G043800 Sobic001G064400--Sobic002G114200 Sobic001G064400--Sobic006G037500 Sobic001G064400--Sobic004G221800 Sobic001G064400--Sobic009G019400 Sobic001G064400--Sobic003G229900 Sobic001G064400--Sobic007G007100 Sobic001G064400--Sobic006G049633 Sobic006G118850 Sobic006G118850 Sobic001G311400--Sobic006G118850 Sobic001G311400--Sobic009G043800 Sobic002G180200 Sobic002G180200 Sobic001G311400--Sobic002G180200 Sobic006G128450 Sobic006G128450 Sobic001G311400--Sobic006G128450 Sobic001G311400--Sobic006G037500 Sobic001G311400--Sobic001G064400 Sobic001G311400--Sobic002G191450 Sobic001G311400--Sobic010G034700 Sobic003G108401 Sobic003G108401 Sobic001G311400--Sobic003G108401
Octagon: transcription factors


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