Gene annotation
Transcriptome id Sobic.002G309000.1
Synonym Sb02g033890
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ubiquitin fusion protein, putative, expressed
UniProt C5X993
Pfam PF11976 PF01020
Panther DB PTHR10666
NCBI CDD KOG0003; Ubiquitin/60s ribosomal protein L40 fusion
KEGG Orthology K02927; RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G36170 : Ubiquitin supergroup;Ribosomal protein L40e
RAP-DB (Rice) LOC_Os09g27930.1 : ubiquitin fusion protein, putative, expressed
MaizeGDB (Corn) Zm00025a042947 , Zm00025a014723 , Zm00025a005173 , Zm00025a001454 , Zm00025a050018 , Zm00025a001458 , Zm00025a048116 , Zm00025a039850 , Zm00025a013490
Brachypodium KQJ91591 , KQK04218 , KQK17173 , KQK06725 , KQK04203 , KQK17147 , PNT77709 , PNT77708 , KQK04197 , KQJ97255 , KQK04204 , KQK07353 , KQJ89932 , KQJ93343 , KQK16153
Barley HORVU4Hr1G001170.5 , HORVU4Hr1G001170.4 , HORVU7Hr1G113500.1 , HORVU4Hr1G001170.1 , HORVU4Hr1G001170.3 , HORVU4Hr1G001170.2 , HORVU1Hr1G043930.6 , HORVU1Hr1G043930.7 , HORVU1Hr1G043930.4 , HORVU1Hr1G043930.5 , HORVU1Hr1G043930.2 , HORVU1Hr1G043930.3 , HORVU1Hr1G043930.1 , HORVU1Hr1G043930.8 , HORVU1Hr1G043930.9 , HORVU2Hr1G104410.8 , HORVU2Hr1G104410.9 , HORVU2Hr1G104410.1 , HORVU2Hr1G104410.2 , HORVU2Hr1G104410.3 , HORVU2Hr1G104410.4 , HORVU2Hr1G104410.5 , HORVU2Hr1G104410.6 , HORVU2Hr1G104410.7 , HORVU6Hr1G029050.4 , HORVU1Hr1G043930.10 , HORVU1Hr1G043930.11 , HORVU6Hr1G020140.8 , HORVU6Hr1G020140.7 , HORVU6Hr1G020140.6 , HORVU6Hr1G020140.5 , HORVU6Hr1G020140.4 , HORVU6Hr1G020140.3 , HORVU6Hr1G020140.2 , HORVU6Hr1G020140.1 , HORVU5Hr1G072680.1 , HORVU5Hr1G072680.2 , HORVU5Hr1G072680.3 , HORVU1Hr1G023660.1 , HORVU1Hr1G023660.2 , HORVU1Hr1G023660.3 , HORVU7Hr1G029070.1 , HORVU2Hr1G104440.3 , HORVU2Hr1G104440.2 , HORVU2Hr1G104440.1 , HORVU2Hr1G104440.7 , HORVU2Hr1G104440.6 , HORVU2Hr1G104440.5 , HORVU2Hr1G104440.4 , HORVU2Hr1G104410.12 , HORVU2Hr1G104410.13 , HORVU2Hr1G104410.10 , HORVU2Hr1G104410.11 , HORVU2Hr1G104410.16 , HORVU2Hr1G104410.17 , HORVU2Hr1G104410.14 , HORVU2Hr1G104410.15 , HORVU2Hr1G104410.18 , HORVU2Hr1G104410.19 , HORVU6Hr1G026260.19 , HORVU6Hr1G026260.16 , HORVU6Hr1G026260.17 , HORVU6Hr1G026260.14 , HORVU6Hr1G026260.15 , HORVU6Hr1G026260.12 , HORVU6Hr1G026260.13 , HORVU6Hr1G026260.10 , HORVU6Hr1G026260.11 , HORVU3Hr1G014180.1 , HORVU1Hr1G087690.10 , HORVU6Hr1G026200.6 , HORVU6Hr1G026200.7 , HORVU6Hr1G026200.5 , HORVU6Hr1G026200.2 , HORVU6Hr1G026200.1 , HORVU6Hr1G026200.8 , HORVU6Hr1G026200.9 , HORVU3Hr1G014150.2 , HORVU3Hr1G014150.3 , HORVU3Hr1G014150.1 , HORVU3Hr1G014150.4 , HORVU3Hr1G014150.5 , HORVU6Hr1G026260.8 , HORVU6Hr1G026260.9 , HORVU6Hr1G026260.6 , HORVU6Hr1G026260.7 , HORVU6Hr1G026260.1 , HORVU6Hr1G026260.2 , HORVU1Hr1G087690.9 , HORVU1Hr1G087690.8 , HORVU1Hr1G087690.3 , HORVU1Hr1G087690.2 , HORVU1Hr1G087690.1 , HORVU1Hr1G087690.7 , HORVU1Hr1G087690.6 , HORVU1Hr1G087690.5 , HORVU1Hr1G087690.4 , HORVU7Hr1G103330.13 , HORVU7Hr1G103330.14 , HORVU6Hr1G026200.14 , HORVU6Hr1G026200.10 , HORVU6Hr1G026200.11 , HORVU6Hr1G026200.12 , HORVU6Hr1G026200.13 , HORVU2Hr1G104410.23 , HORVU2Hr1G104410.22 , HORVU2Hr1G104410.21 , HORVU2Hr1G104410.20 , HORVU2Hr1G104410.26 , HORVU2Hr1G104410.25 , HORVU2Hr1G104410.24 , HORVU6Hr1G026260.21 , HORVU6Hr1G026260.20 , HORVU7Hr1G103330.6 , HORVU7Hr1G103330.3 , HORVU7Hr1G103160.1 , HORVU7Hr1G103160.2 , HORVU7Hr1G103160.3 , HORVU7Hr1G103160.4 , HORVU7Hr1G029100.1 , HORVU6Hr1G021700.6 , HORVU6Hr1G021700.4 , HORVU6Hr1G021700.5 , HORVU6Hr1G021700.2 , HORVU6Hr1G021700.3 , HORVU6Hr1G021700.1 , HORVU7Hr1G103170.7 , HORVU7Hr1G103170.6 , HORVU7Hr1G103170.5 , HORVU7Hr1G103170.4 , HORVU7Hr1G103170.2 , HORVU7Hr1G103170.1 , HORVU7Hr1G103170.9 , HORVU7Hr1G103170.8 , HORVU7Hr1G029150.2 , HORVU7Hr1G029150.1 , HORVU1Hr1G087690.17 , HORVU1Hr1G087690.16 , HORVU1Hr1G087690.15 , HORVU1Hr1G087690.14 , HORVU6Hr1G029050.2 , HORVU6Hr1G029050.3 , HORVU6Hr1G029050.1 , HORVU6Hr1G029050.6 , HORVU6Hr1G029050.7 , HORVU6Hr1G029050.5 , HORVU6Hr1G029050.8 , HORVU6Hr1G029050.9 , HORVU3Hr1G014180.5 , HORVU3Hr1G014180.4 , HORVU3Hr1G014180.3 , HORVU3Hr1G014180.2 , HORVU4Hr1G061900.4 , HORVU4Hr1G061900.2 , HORVU4Hr1G061900.3 , HORVU4Hr1G061900.1 , HORVU7Hr1G109650.1 , HORVU7Hr1G109650.2 , HORVU1Hr1G087690.13 , HORVU1Hr1G087690.12 , HORVU1Hr1G087690.11
Wheat TraesCS6D02G109600 , TraesCS7D02G474300 , TraesCS6A02G136700 , TraesCS4D02G006900 , TraesCS6B02G148000 , TraesCS2D02G459100 , TraesCS5A02G196400 , TraesCS2D02G405500 , TraesCS7B02G390900 , TraesCS2A02G458000 , TraesCS2B02G480600 , TraesCS6A02G119700 , TraesCS6A02G119700 , TraesCS2D02G458600 , TraesCS5A02G196700 , TraesCS4A02G086400 , TraesCS5B02G187200 , TraesCS4D02G218400 , TraesCS7D02G474200 , TraesCS4B02G218100 , TraesCS2D02G580700 , TraesCS1B02G241200 , TraesCS6A02G087100 , TraesCS6B02G164700 , TraesCS6B02G164700 , TraesCS6B02G176000 , TraesCS4D02G218300 , TraesCS4B02G008400 , TraesCS6B02G110300 , TraesCS7B02G413800 , TraesCS6D02G136800 , TraesCS6A02G112400 , TraesCS5D02G269800 , TraesCS6A02G147500 , TraesCS5D02G194700 , TraesCS1A02G227100 , TraesCS2A02G458800 , TraesCS4A02G086300 , TraesCS2B02G480300 , TraesCS2B02G480400 , TraesCS7D02G494400 , TraesCS6D02G125600 , TraesCS7B02G390800 , TraesCS4A02G077000 , TraesCS4A02G077000 , TraesCS2A02G408200 , TraesCS7A02G506300 , TraesCS4B02G218000 , TraesCS2A02G458100 , TraesCS5B02G260700 , TraesCS4A02G306500 , TraesCS7A02G487500 , TraesCS1D02G228700
Populus PNT28506


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G254100 pleiotropic drug resistance protein, putative, expressed -
2 Sobic.006G112300 RNA recognition motif family protein, expressed -
3 Sobic.003G088600 transcription factor X1, putative, expressed -
4 Sobic.003G091300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
5 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -
6 Sobic.001G137500 ankyrin, putative, expressed -
7 Sobic.008G137700 XH domain containing protein, expressed -
8 Sobic.003G006000 expressed protein -
9 Sobic.008G138200 RNA recognition motif family protein, expressed -
10 Sobic.002G053350 - -
11 Sobic.002G178700 ubiquitin fusion protein, putative, expressed -
12 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
13 Sobic.002G319400 AAA family ATPase, putative, expressed K08900: mitochondrial chaperone BCS1
14 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
15 Sobic.003G396500 ZOS5-12 - C2H2 zinc finger protein, expressed -
16 Sobic.002G299200 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
17 Sobic.007G043000 transcription factor X1, putative, expressed -
18 Sobic.001G500500 expressed protein -
19 Sobic.004G024400 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
20 Sobic.001G235100 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic002G309000 Sobic002G309000 Sobic004G254100 Sobic004G254100 Sobic002G309000--Sobic004G254100 Sobic006G112300 Sobic006G112300 Sobic002G309000--Sobic006G112300 Sobic003G088600 Sobic003G088600 Sobic002G309000--Sobic003G088600 Sobic003G091300 Sobic003G091300 Sobic002G309000--Sobic003G091300 Sobic001G288000 Sobic001G288000 Sobic002G309000--Sobic001G288000 Sobic001G137500 Sobic001G137500 Sobic002G309000--Sobic001G137500 Sobic008G137700 Sobic008G137700 Sobic002G309000--Sobic008G137700 Sobic003G006000 Sobic003G006000 Sobic002G309000--Sobic003G006000 Sobic008G138200 Sobic008G138200 Sobic002G309000--Sobic008G138200 Sobic007G043000 Sobic007G043000 Sobic004G254100--Sobic007G043000 Sobic001G235100 Sobic001G235100 Sobic004G254100--Sobic001G235100 Sobic001G216400 Sobic001G216400 Sobic004G254100--Sobic001G216400 Sobic003G381100 Sobic003G381100 Sobic004G254100--Sobic003G381100 Sobic004G254100--Sobic008G138200 Sobic007G128200 Sobic007G128200 Sobic004G254100--Sobic007G128200 Sobic007G193300 Sobic007G193300 Sobic004G254100--Sobic007G193300 Sobic004G056000 Sobic004G056000 Sobic004G254100--Sobic004G056000 Sobic002G121900 Sobic002G121900 Sobic004G254100--Sobic002G121900 Sobic006G015100 Sobic006G015100 Sobic006G112300--Sobic006G015100 Sobic010G194600 Sobic010G194600 Sobic006G112300--Sobic010G194600 Sobic003G300000 Sobic003G300000 Sobic006G112300--Sobic003G300000 Sobic006G271600 Sobic006G271600 Sobic006G112300--Sobic006G271600 Sobic006G112300--Sobic003G088600 Sobic006G112300--Sobic007G043000 Sobic006G112300--Sobic001G235100 Sobic006G112300--Sobic007G128200 Sobic001G137800 Sobic001G137800 Sobic006G112300--Sobic001G137800 Sobic003G088600--Sobic008G137700 Sobic003G088600--Sobic001G137500 Sobic002G053350 Sobic002G053350 Sobic003G088600--Sobic002G053350 Sobic001G419500 Sobic001G419500 Sobic003G088600--Sobic001G419500 Sobic003G088600--Sobic010G194600 Sobic003G088600--Sobic006G271600 Sobic003G088600--Sobic003G006000 Sobic009G219500 Sobic009G219500 Sobic003G088600--Sobic009G219500 Sobic002G178700 Sobic002G178700 Sobic003G088600--Sobic002G178700 Sobic010G111750 Sobic010G111750 Sobic003G091300--Sobic010G111750 Sobic003G091300--Sobic001G288000 Sobic003G091300--Sobic002G178700 Sobic003G091300--Sobic001G137500 Sobic003G091300--Sobic003G006000 Sobic002G258000 Sobic002G258000 Sobic003G091300--Sobic002G258000 Sobic003G091300--Sobic001G419500 Sobic002G205000 Sobic002G205000 Sobic003G091300--Sobic002G205000 Sobic004G031501 Sobic004G031501 Sobic003G091300--Sobic004G031501 Sobic001G137400 Sobic001G137400 Sobic001G288000--Sobic001G137400 Sobic001G288000--Sobic001G137500 Sobic001G288000--Sobic003G091300 Sobic001G288000--Sobic002G258000 Sobic001G288000--Sobic007G193300 Sobic002G299200 Sobic002G299200 Sobic001G288000--Sobic002G299200 Sobic001G288000--Sobic003G006000 Sobic001G288000--Sobic002G178700 Sobic001G288000--Sobic001G419500 Sobic001G137500--Sobic001G419500 Sobic001G137500--Sobic002G258000 Sobic001G457600 Sobic001G457600 Sobic001G137500--Sobic001G457600 Sobic001G137500--Sobic002G178700 Sobic001G137500--Sobic003G006000 Sobic001G137500--Sobic007G193300 Sobic001G137500--Sobic001G137400 Sobic001G137500--Sobic010G194600 Sobic001G137500--Sobic003G088600 Sobic008G137700--Sobic003G088600 Sobic008G137700--Sobic002G053350 Sobic008G137700--Sobic001G419500 Sobic008G137700--Sobic002G178700 Sobic008G137700--Sobic001G137500 Sobic008G137700--Sobic003G300000 Sobic004G234600 Sobic004G234600 Sobic008G137700--Sobic004G234600 Sobic008G137700--Sobic010G194600 Sobic008G137700--Sobic003G006000 Sobic003G006000--Sobic002G178700 Sobic003G006000--Sobic001G137500 Sobic003G006000--Sobic001G419500 Sobic003G006000--Sobic006G271600 Sobic002G078900 Sobic002G078900 Sobic003G006000--Sobic002G078900 Sobic003G006000--Sobic003G088600 Sobic009G243000 Sobic009G243000 Sobic003G006000--Sobic009G243000 Sobic003G006000--Sobic002G258000 Sobic003G006000--Sobic001G457600 Sobic008G138200--Sobic007G043000 Sobic008G138200--Sobic001G235100 Sobic008G138200--Sobic004G254100 Sobic001G287900 Sobic001G287900 Sobic008G138200--Sobic001G287900 Sobic001G141900 Sobic001G141900 Sobic008G138200--Sobic001G141900 Sobic003G063700 Sobic003G063700 Sobic008G138200--Sobic003G063700 Sobic003G044800 Sobic003G044800 Sobic008G138200--Sobic003G044800 Sobic001G152901 Sobic001G152901 Sobic008G138200--Sobic001G152901 Sobic001G235200 Sobic001G235200 Sobic008G138200--Sobic001G235200
Octagon: transcription factors


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