Gene annotation
Transcriptome id Sobic.004G024400.3,Sobic.004G024400.4,Sobic.004G024400.1,Sobic.004G024400.2
Synonym Sb04g002170, PEP
Functional annotation KH domain containing protein, putative, expressed
UniProt A0A194YMC4 , A0A1Z5RKK2 , A0A1Z5RKK7 , A0A1Z5RLE0
Pfam PF00013
Panther DB PTHR10288 PTHR10288:SF169
NCBI CDD KOG2190; PolyC-binding proteins alphaCP-1 and related KH domain proteins
KEGG Orthology K13162; poly(rC)-binding protein 2
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT4G26000 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os02g03310.1,LOC_Os10g41440.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a018798
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G088600 transcription factor X1, putative, expressed -
2 Sobic.008G137700 XH domain containing protein, expressed -
3 Sobic.006G112300 RNA recognition motif family protein, expressed -
4 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
5 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
6 Sobic.001G137500 ankyrin, putative, expressed -
7 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
8 Sobic.003G300000 expressed protein -
9 Sobic.003G006000 expressed protein -
10 Sobic.002G178700 ubiquitin fusion protein, putative, expressed -
11 Sobic.001G457600 piwi domain containing protein, expressed -
12 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
13 Sobic.007G128200 expressed protein -
14 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
15 Sobic.006G015100 expressed protein -
16 Sobic.009G219500 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
17 Sobic.002G053350 - -
18 Sobic.004G234600 expressed protein -
19 Sobic.001G137800 ankyrin, putative, expressed -
20 Sobic.009G211300 MATH domain containing protein, expressed -


Gene co-expression network
sample Sobic004G024400 Sobic004G024400 Sobic003G088600 Sobic003G088600 Sobic004G024400--Sobic003G088600 Sobic008G137700 Sobic008G137700 Sobic004G024400--Sobic008G137700 Sobic006G112300 Sobic006G112300 Sobic004G024400--Sobic006G112300 Sobic006G271600 Sobic006G271600 Sobic004G024400--Sobic006G271600 Sobic010G194600 Sobic010G194600 Sobic004G024400--Sobic010G194600 Sobic001G137500 Sobic001G137500 Sobic004G024400--Sobic001G137500 Sobic001G419500 Sobic001G419500 Sobic004G024400--Sobic001G419500 Sobic003G300000 Sobic003G300000 Sobic004G024400--Sobic003G300000 Sobic003G006000 Sobic003G006000 Sobic004G024400--Sobic003G006000 Sobic003G088600--Sobic008G137700 Sobic003G088600--Sobic001G137500 Sobic002G053350 Sobic002G053350 Sobic003G088600--Sobic002G053350 Sobic003G088600--Sobic001G419500 Sobic003G088600--Sobic010G194600 Sobic003G088600--Sobic006G271600 Sobic003G088600--Sobic003G006000 Sobic009G219500 Sobic009G219500 Sobic003G088600--Sobic009G219500 Sobic002G178700 Sobic002G178700 Sobic003G088600--Sobic002G178700 Sobic008G137700--Sobic003G088600 Sobic008G137700--Sobic002G053350 Sobic008G137700--Sobic001G419500 Sobic008G137700--Sobic002G178700 Sobic008G137700--Sobic001G137500 Sobic008G137700--Sobic003G300000 Sobic004G234600 Sobic004G234600 Sobic008G137700--Sobic004G234600 Sobic008G137700--Sobic010G194600 Sobic008G137700--Sobic003G006000 Sobic006G015100 Sobic006G015100 Sobic006G112300--Sobic006G015100 Sobic006G112300--Sobic010G194600 Sobic006G112300--Sobic003G300000 Sobic006G112300--Sobic006G271600 Sobic006G112300--Sobic003G088600 Sobic007G043000 Sobic007G043000 Sobic006G112300--Sobic007G043000 Sobic001G235100 Sobic001G235100 Sobic006G112300--Sobic001G235100 Sobic007G128200 Sobic007G128200 Sobic006G112300--Sobic007G128200 Sobic001G137800 Sobic001G137800 Sobic006G112300--Sobic001G137800 Sobic001G071600 Sobic001G071600 Sobic006G271600--Sobic001G071600 Sobic006G271600--Sobic010G194600 Sobic003G117200 Sobic003G117200 Sobic006G271600--Sobic003G117200 Sobic009G243000 Sobic009G243000 Sobic006G271600--Sobic009G243000 Sobic006G271600--Sobic003G300000 Sobic002G078900 Sobic002G078900 Sobic006G271600--Sobic002G078900 Sobic003G046400 Sobic003G046400 Sobic006G271600--Sobic003G046400 Sobic010G183800 Sobic010G183800 Sobic006G271600--Sobic010G183800 Sobic006G271600--Sobic003G088600 Sobic001G457600 Sobic001G457600 Sobic010G194600--Sobic001G457600 Sobic010G194600--Sobic006G271600 Sobic010G194600--Sobic007G128200 Sobic010G194600--Sobic001G137500 Sobic010G194600--Sobic001G419500 Sobic010G194600--Sobic003G088600 Sobic010G194600--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic010G194600--Sobic009G063700 Sobic010G194600--Sobic003G300000 Sobic001G137500--Sobic001G419500 Sobic002G258000 Sobic002G258000 Sobic001G137500--Sobic002G258000 Sobic001G137500--Sobic001G457600 Sobic001G137500--Sobic002G178700 Sobic001G137500--Sobic003G006000 Sobic007G193300 Sobic007G193300 Sobic001G137500--Sobic007G193300 Sobic001G137400 Sobic001G137400 Sobic001G137500--Sobic001G137400 Sobic001G137500--Sobic010G194600 Sobic001G137500--Sobic003G088600 Sobic001G419500--Sobic002G178700 Sobic001G419500--Sobic001G137500 Sobic001G216400 Sobic001G216400 Sobic001G419500--Sobic001G216400 Sobic001G419500--Sobic003G006000 Sobic001G419500--Sobic001G457600 Sobic001G419500--Sobic009G063700 Sobic001G419500--Sobic002G258000 Sobic001G419500--Sobic010G194600 Sobic009G075500 Sobic009G075500 Sobic001G419500--Sobic009G075500 Sobic003G300000--Sobic010G183800 Sobic001G459400 Sobic001G459400 Sobic003G300000--Sobic001G459400 Sobic003G092300 Sobic003G092300 Sobic003G300000--Sobic003G092300 Sobic003G300000--Sobic002G078900 Sobic003G300000--Sobic009G063700 Sobic003G300000--Sobic009G075500 Sobic003G300000--Sobic006G271600 Sobic004G281000 Sobic004G281000 Sobic003G300000--Sobic004G281000 Sobic003G300000--Sobic001G419500 Sobic003G006000--Sobic002G178700 Sobic003G006000--Sobic001G137500 Sobic003G006000--Sobic001G419500 Sobic003G006000--Sobic006G271600 Sobic003G006000--Sobic002G078900 Sobic003G006000--Sobic003G088600 Sobic003G006000--Sobic009G243000 Sobic003G006000--Sobic002G258000 Sobic003G006000--Sobic001G457600
Octagon: transcription factors


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