Gene annotation
Transcriptome id Sobic.006G116000.1
Synonym SVL1, Sb06g019730
Functional annotation Glycerophosphoryl diester phosphodiesterase family protein (Os) (PubMedID : 27208977)
glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
UniProt C5YAC3
Pfam PF03009
Panther DB PTHR23344 PTHR23344:SF29
NCBI CDD KOG2258; Glycerophosphoryl diester phosphodiesterase
KEGG Orthology -
Gene Ontology GO:0008081; phosphoric diester hydrolase activity GO:0006629lipid metabolic process GO:0008889glycerophosphodiester phosphodiesterase activity


Orthologs (automatic annotation)
TAIR AT5G55480 : SHV3-like 1
RAP-DB (Rice) LOC_Os04g39610.1 : glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a056279 , Zm00025a021360 , Zm00025a031778
Brachypodium KQK00095 , KQJ83113 , KQJ83112
Barley HORVU2Hr1G081920.4 , HORVU2Hr1G081920.5 , HORVU2Hr1G081920.6 , HORVU2Hr1G081920.7 , HORVU2Hr1G081920.1 , HORVU2Hr1G081920.2 , HORVU2Hr1G081920.3 , HORVU2Hr1G081920.8 , HORVU2Hr1G081920.9
Wheat TraesCS6D02G189300 , TraesCS6B02G226700 , TraesCS6B02G226700 , TraesCS2D02G332500 , TraesCS6A02G200600 , TraesCS2B02G352000 , TraesCS2A02G330200
Populus -


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cDNA sequences
Sobic.006G116000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G247000 expressed protein -
2 Sobic.003G002000 expressed protein -
3 Sobic.006G014400 pectate lyase precursor, putative, expressed K01728: pectate lyase
4 Sobic.003G088600 transcription factor X1, putative, expressed -
5 Sobic.009G136000 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
6 Sobic.008G137700 XH domain containing protein, expressed -
7 Sobic.002G205000 ZOS9-06 - C2H2 zinc finger protein, expressed -
8 Sobic.001G175100 DEK C terminal domain containing protein, expressed -
9 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
10 Sobic.001G439800 Subtilisin-like serine protease 2("PubMedID : 26759170,PubMedID : 24597475")@OsSub28 - Putative Subtilisin homologue, expressed -
11 Sobic.008G070700 leafbladeless1, putative, expressed -
12 Sobic.001G323900 OsFBX238 - F-box domain containing protein, expressed -
13 Sobic.003G091300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
14 Sobic.001G137600 ankyrin, putative, expressed -
15 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
16 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
17 Sobic.004G024400 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
18 Sobic.003G010700 plant-specific domain TIGR01568 family protein, expressed -
19 Sobic.003G085900 Glycosyl hydrolase. predicted target of sbi-miR-5568 and sbi-miR-6220 expressed in the stems of sweet sorghum(PubMedID : 26117170)@glycosyl hydrolase, family 31, putative, expressed K15925: alpha-D-xyloside xylohydrolase
20 Sobic.010G077000 "Upregulated in leave and stem in response to drouht stress, not expredded in roots"(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed -


Gene co-expression network
sample Sobic006G116000 Sobic006G116000 Sobic010G247000 Sobic010G247000 Sobic006G116000--Sobic010G247000 Sobic003G002000 Sobic003G002000 Sobic006G116000--Sobic003G002000 Sobic006G014400 Sobic006G014400 Sobic006G116000--Sobic006G014400 Sobic003G088600 Sobic003G088600 Sobic006G116000--Sobic003G088600 Sobic009G136000 Sobic009G136000 Sobic006G116000--Sobic009G136000 Sobic008G137700 Sobic008G137700 Sobic006G116000--Sobic008G137700 Sobic002G205000 Sobic002G205000 Sobic006G116000--Sobic002G205000 Sobic001G175100 Sobic001G175100 Sobic006G116000--Sobic001G175100 Sobic009G243000 Sobic009G243000 Sobic006G116000--Sobic009G243000 Sobic001G455900 Sobic001G455900 Sobic010G247000--Sobic001G455900 Sobic006G163300 Sobic006G163300 Sobic010G247000--Sobic006G163300 Sobic003G010700 Sobic003G010700 Sobic010G247000--Sobic003G010700 Sobic007G033700 Sobic007G033700 Sobic010G247000--Sobic007G033700 Sobic001G143400 Sobic001G143400 Sobic010G247000--Sobic001G143400 Sobic003G046400 Sobic003G046400 Sobic010G247000--Sobic003G046400 Sobic010G276600 Sobic010G276600 Sobic010G247000--Sobic010G276600 Sobic009G171800 Sobic009G171800 Sobic010G247000--Sobic009G171800 Sobic010G247000--Sobic006G014400 Sobic006G274200 Sobic006G274200 Sobic003G002000--Sobic006G274200 Sobic007G209200 Sobic007G209200 Sobic003G002000--Sobic007G209200 Sobic003G002000--Sobic006G163300 Sobic003G019900 Sobic003G019900 Sobic003G002000--Sobic003G019900 Sobic003G002000--Sobic003G010700 Sobic001G101900 Sobic001G101900 Sobic003G002000--Sobic001G101900 Sobic008G138000 Sobic008G138000 Sobic003G002000--Sobic008G138000 Sobic010G269700 Sobic010G269700 Sobic003G002000--Sobic010G269700 Sobic007G147200 Sobic007G147200 Sobic003G002000--Sobic007G147200 Sobic006G014400--Sobic010G247000 Sobic007G087800 Sobic007G087800 Sobic006G014400--Sobic007G087800 Sobic002G430700 Sobic002G430700 Sobic006G014400--Sobic002G430700 Sobic010G231600 Sobic010G231600 Sobic006G014400--Sobic010G231600 Sobic007G116800 Sobic007G116800 Sobic006G014400--Sobic007G116800 Sobic006G014400--Sobic006G163300 Sobic010G077000 Sobic010G077000 Sobic006G014400--Sobic010G077000 Sobic010G092400 Sobic010G092400 Sobic006G014400--Sobic010G092400 Sobic006G270500 Sobic006G270500 Sobic006G014400--Sobic006G270500 Sobic003G088600--Sobic008G137700 Sobic001G137500 Sobic001G137500 Sobic003G088600--Sobic001G137500 Sobic002G053350 Sobic002G053350 Sobic003G088600--Sobic002G053350 Sobic001G419500 Sobic001G419500 Sobic003G088600--Sobic001G419500 Sobic010G194600 Sobic010G194600 Sobic003G088600--Sobic010G194600 Sobic006G271600 Sobic006G271600 Sobic003G088600--Sobic006G271600 Sobic003G006000 Sobic003G006000 Sobic003G088600--Sobic003G006000 Sobic009G219500 Sobic009G219500 Sobic003G088600--Sobic009G219500 Sobic002G178700 Sobic002G178700 Sobic003G088600--Sobic002G178700 Sobic010G038200 Sobic010G038200 Sobic009G136000--Sobic010G038200 Sobic001G082800 Sobic001G082800 Sobic009G136000--Sobic001G082800 Sobic009G125800 Sobic009G125800 Sobic009G136000--Sobic009G125800 Sobic008G131900 Sobic008G131900 Sobic009G136000--Sobic008G131900 Sobic010G030000 Sobic010G030000 Sobic009G136000--Sobic010G030000 Sobic006G193100 Sobic006G193100 Sobic009G136000--Sobic006G193100 Sobic002G390800 Sobic002G390800 Sobic009G136000--Sobic002G390800 Sobic009G131200 Sobic009G131200 Sobic009G136000--Sobic009G131200 Sobic002G052800 Sobic002G052800 Sobic009G136000--Sobic002G052800 Sobic008G137700--Sobic003G088600 Sobic008G137700--Sobic002G053350 Sobic008G137700--Sobic001G419500 Sobic008G137700--Sobic002G178700 Sobic008G137700--Sobic001G137500 Sobic003G300000 Sobic003G300000 Sobic008G137700--Sobic003G300000 Sobic004G234600 Sobic004G234600 Sobic008G137700--Sobic004G234600 Sobic008G137700--Sobic010G194600 Sobic008G137700--Sobic003G006000 Sobic002G205000--Sobic009G243000 Sobic002G205000--Sobic007G033700 Sobic002G078900 Sobic002G078900 Sobic002G205000--Sobic002G078900 Sobic004G237000 Sobic004G237000 Sobic002G205000--Sobic004G237000 Sobic003G091700 Sobic003G091700 Sobic002G205000--Sobic003G091700 Sobic003G319900 Sobic003G319900 Sobic002G205000--Sobic003G319900 Sobic001G137600 Sobic001G137600 Sobic002G205000--Sobic001G137600 Sobic002G205000--Sobic003G006000 Sobic005G131000 Sobic005G131000 Sobic002G205000--Sobic005G131000 Sobic008G070700 Sobic008G070700 Sobic001G175100--Sobic008G070700 Sobic004G003700 Sobic004G003700 Sobic001G175100--Sobic004G003700 Sobic004G198100 Sobic004G198100 Sobic001G175100--Sobic004G198100 Sobic006G221800 Sobic006G221800 Sobic001G175100--Sobic006G221800 Sobic001G101700 Sobic001G101700 Sobic001G175100--Sobic001G101700 Sobic008G088800 Sobic008G088800 Sobic001G175100--Sobic008G088800 Sobic001G175100--Sobic007G147200 Sobic001G175100--Sobic001G143400 Sobic001G175100--Sobic008G138000 Sobic009G243000--Sobic007G033700 Sobic009G243000--Sobic002G078900 Sobic009G243000--Sobic006G271600 Sobic001G071600 Sobic001G071600 Sobic009G243000--Sobic001G071600 Sobic009G243000--Sobic002G205000 Sobic009G243000--Sobic003G006000 Sobic009G243000--Sobic003G046400 Sobic009G243000--Sobic001G137600 Sobic002G258000 Sobic002G258000 Sobic009G243000--Sobic002G258000
Octagon: transcription factors


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