Gene annotation
Transcriptome id Sobic.001G175100.1,Sobic.001G175100.2
Synonym Sb01g015220
Functional annotation DEK C terminal domain containing protein, expressed
UniProt A0A1Z5S673 , A0A1Z5S646
Pfam PF08766
Panther DB PTHR13468 PTHR13468:SF1
NCBI CDD KOG2266; Chromatin-associated protein Dek and related proteins, contains SAP DNA binding domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48710 : DEK domain-containing chromatin associated protein
RAP-DB (Rice) LOC_Os03g40010.1 : DEK C terminal domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G070700 leafbladeless1, putative, expressed -
2 Sobic.004G003700 Trihelix Family(PubMedID : 24864043)@expressed protein -
3 Sobic.004G198100 expressed protein -
4 Sobic.006G221800 OsFBX46 - F-box domain containing protein, expressed -
5 Sobic.001G101700 OsGIF1(Ortholog in rice:He et al. (2017))(PubMedID : 31659832)@GRF-interacting factor 1, putative, expressed -
6 Sobic.008G088800 expressed protein -
7 Sobic.007G147200 OsSub56 - Putative Subtilisin homologue, expressed -
8 Sobic.001G143400 Trihelix Family(PubMedID : 24864043)@transcription factor, putative, expressed -
9 Sobic.008G138000 XH domain containing protein, expressed -
10 Sobic.008G114900 rhoGAP domain containing protein, expressed -
11 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
12 Sobic.008G125700 similar to F22D16.26 protein(PubMedID : 29862293)@CSLD4 - cellulose synthase-like family D, expressed K00770: 1,4-beta-D-xylan synthase
13 Sobic.002G313000 targeting protein-related, putative, expressed K16812: targeting protein for Xklp2
14 Sobic.010G119300 expressed protein -
15 Sobic.001G379900 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
16 Sobic.010G077000 "Upregulated in leave and stem in response to drouht stress, not expredded in roots"(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed -
17 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
18 Sobic.003G010700 plant-specific domain TIGR01568 family protein, expressed -
19 Sobic.010G092400 glycosyl transferase 8 domain containing protein, putative, expressed -
20 Sobic.001G398400 expressed protein -


Gene co-expression network
sample Sobic001G175100 Sobic001G175100 Sobic008G070700 Sobic008G070700 Sobic001G175100--Sobic008G070700 Sobic004G003700 Sobic004G003700 Sobic001G175100--Sobic004G003700 Sobic004G198100 Sobic004G198100 Sobic001G175100--Sobic004G198100 Sobic006G221800 Sobic006G221800 Sobic001G175100--Sobic006G221800 Sobic001G101700 Sobic001G101700 Sobic001G175100--Sobic001G101700 Sobic008G088800 Sobic008G088800 Sobic001G175100--Sobic008G088800 Sobic007G147200 Sobic007G147200 Sobic001G175100--Sobic007G147200 Sobic001G143400 Sobic001G143400 Sobic001G175100--Sobic001G143400 Sobic008G138000 Sobic008G138000 Sobic001G175100--Sobic008G138000 Sobic006G272800 Sobic006G272800 Sobic008G070700--Sobic006G272800 Sobic002G112000 Sobic002G112000 Sobic008G070700--Sobic002G112000 Sobic004G267600 Sobic004G267600 Sobic008G070700--Sobic004G267600 Sobic001G439800 Sobic001G439800 Sobic008G070700--Sobic001G439800 Sobic010G222800 Sobic010G222800 Sobic008G070700--Sobic010G222800 Sobic010G092400 Sobic010G092400 Sobic008G070700--Sobic010G092400 Sobic002G317700 Sobic002G317700 Sobic008G070700--Sobic002G317700 Sobic008G070700--Sobic001G175100 Sobic003G393100 Sobic003G393100 Sobic008G070700--Sobic003G393100 Sobic004G003700--Sobic001G143400 Sobic007G209200 Sobic007G209200 Sobic004G003700--Sobic007G209200 Sobic010G168700 Sobic010G168700 Sobic004G003700--Sobic010G168700 Sobic004G003700--Sobic007G147200 Sobic004G003700--Sobic006G221800 Sobic009G047500 Sobic009G047500 Sobic004G003700--Sobic009G047500 Sobic004G003700--Sobic001G101700 Sobic005G168400 Sobic005G168400 Sobic004G003700--Sobic005G168400 Sobic004G003700--Sobic008G138000 Sobic003G260700 Sobic003G260700 Sobic004G198100--Sobic003G260700 Sobic010G119300 Sobic010G119300 Sobic004G198100--Sobic010G119300 Sobic001G398400 Sobic001G398400 Sobic004G198100--Sobic001G398400 Sobic008G125700 Sobic008G125700 Sobic004G198100--Sobic008G125700 Sobic004G257600 Sobic004G257600 Sobic004G198100--Sobic004G257600 Sobic001G170800 Sobic001G170800 Sobic004G198100--Sobic001G170800 Sobic004G339500 Sobic004G339500 Sobic004G198100--Sobic004G339500 Sobic002G313000 Sobic002G313000 Sobic004G198100--Sobic002G313000 Sobic004G271300 Sobic004G271300 Sobic004G198100--Sobic004G271300 Sobic001G496400 Sobic001G496400 Sobic006G221800--Sobic001G496400 Sobic006G221800--Sobic001G101700 Sobic008G114900 Sobic008G114900 Sobic006G221800--Sobic008G114900 Sobic006G221800--Sobic004G003700 Sobic002G050700 Sobic002G050700 Sobic006G221800--Sobic002G050700 Sobic008G151600 Sobic008G151600 Sobic006G221800--Sobic008G151600 Sobic002G319300 Sobic002G319300 Sobic006G221800--Sobic002G319300 Sobic009G087700 Sobic009G087700 Sobic006G221800--Sobic009G087700 Sobic001G493900 Sobic001G493900 Sobic006G221800--Sobic001G493900 Sobic001G101700--Sobic006G221800 Sobic010G255000 Sobic010G255000 Sobic001G101700--Sobic010G255000 Sobic001G101700--Sobic004G003700 Sobic001G101700--Sobic007G147200 Sobic007G201900 Sobic007G201900 Sobic001G101700--Sobic007G201900 Sobic001G101700--Sobic007G209200 Sobic001G101700--Sobic008G151600 Sobic009G057800 Sobic009G057800 Sobic001G101700--Sobic009G057800 Sobic001G101700--Sobic001G143400 Sobic010G070900 Sobic010G070900 Sobic008G088800--Sobic010G070900 Sobic003G010700 Sobic003G010700 Sobic008G088800--Sobic003G010700 Sobic008G088800--Sobic010G168700 Sobic008G088800--Sobic001G175100 Sobic008G088800--Sobic005G168400 Sobic008G088800--Sobic001G143400 Sobic006G163300 Sobic006G163300 Sobic008G088800--Sobic006G163300 Sobic001G455900 Sobic001G455900 Sobic008G088800--Sobic001G455900 Sobic008G088800--Sobic004G003700 Sobic007G147200--Sobic010G070900 Sobic007G147200--Sobic010G255000 Sobic007G147200--Sobic004G003700 Sobic003G046400 Sobic003G046400 Sobic007G147200--Sobic003G046400 Sobic007G147200--Sobic006G163300 Sobic007G147200--Sobic001G143400 Sobic003G019900 Sobic003G019900 Sobic007G147200--Sobic003G019900 Sobic006G107500 Sobic006G107500 Sobic007G147200--Sobic006G107500 Sobic007G147200--Sobic001G101700 Sobic001G143400--Sobic004G003700 Sobic001G143400--Sobic010G168700 Sobic001G143400--Sobic005G168400 Sobic001G143400--Sobic007G147200 Sobic001G143400--Sobic010G070900 Sobic001G143400--Sobic009G047500 Sobic005G199700 Sobic005G199700 Sobic001G143400--Sobic005G199700 Sobic001G143400--Sobic008G138000 Sobic001G143400--Sobic007G209200 Sobic008G138000--Sobic007G209200 Sobic008G138000--Sobic004G003700 Sobic008G138000--Sobic001G143400 Sobic008G138000--Sobic007G147200 Sobic008G138000--Sobic006G163300 Sobic008G138000--Sobic010G168700 Sobic008G138000--Sobic001G101700 Sobic003G002000 Sobic003G002000 Sobic008G138000--Sobic003G002000 Sobic010G077000 Sobic010G077000 Sobic008G138000--Sobic010G077000
Octagon: transcription factors


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