Gene annotation
Transcriptome id Sobic.001G198000.1
Synonym Sb01g017440, LSU4
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
UP-9A, putative, expressed
UniProt C5WWA2
Pfam -
Panther DB PTHR34283
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G24655 : response to low sulfur 4
RAP-DB (Rice) LOC_Os10g36610.1 : UP-9A, putative, expressed
MaizeGDB (Corn) Zm00025a017448 , Zm00025a006355
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G198000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G149400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K15849: PAT, bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
2 Sobic.003G362100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
3 Sobic.009G068200 phosphoribosyl transferase, putative, expressed K00760: hprT, hpt, hypoxanthine phosphoribosyltransferase
4 Sobic.005G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.003G442900 expressed protein -
6 Sobic.001G440700 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
7 Sobic.009G001400 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
8 Sobic.009G155200 ZOS5-08 - C2H2 zinc finger protein, expressed -
9 Sobic.004G017800 ubiquitin-conjugating enzyme 28(PubMedID : 26465154)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
10 Sobic.004G271700 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
11 Sobic.006G264300 GA18008-PA, putative, expressed -
12 Sobic.001G450700 RHsf 8/ Hsf 3(PubMedID : 27006630)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
13 Sobic.006G131400 expressed protein -
14 Sobic.006G107200 molybdopterin biosynthesis protein CNX3, putative, expressed K03639: moaA, GTP 3',8-cyclase
15 Sobic.010G185500 ethanol tolerance protein GEKO1, putative, expressed K09716: dtdA, D-aminoacyl-tRNA deacylase
16 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
17 Sobic.003G023000 CID11, putative, expressed -
18 Sobic.007G057500 - -
19 Sobic.006G038800 purple acid phosphatase 27("PubMedID : 26759170,PubMedID : 24597475")@nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
20 Sobic.002G264400 metallo-beta-lactamase family protein, putative, expressed K01069: gloB, gloC, hydroxyacylglutathione hydrolase


Gene co-expression network
sample Sobic001G198000 Sobic001G198000 Sobic009G149400 Sobic009G149400 Sobic001G198000--Sobic009G149400 Sobic003G362100 Sobic003G362100 Sobic001G198000--Sobic003G362100 Sobic009G068200 Sobic009G068200 Sobic001G198000--Sobic009G068200 Sobic005G038900 Sobic005G038900 Sobic001G198000--Sobic005G038900 Sobic003G442900 Sobic003G442900 Sobic001G198000--Sobic003G442900 Sobic001G440700 Sobic001G440700 Sobic001G198000--Sobic001G440700 Sobic009G001400 Sobic009G001400 Sobic001G198000--Sobic009G001400 Sobic009G155200 Sobic009G155200 Sobic001G198000--Sobic009G155200 Sobic004G017800 Sobic004G017800 Sobic001G198000--Sobic004G017800 Sobic002G187500 Sobic002G187500 Sobic009G149400--Sobic002G187500 Sobic001G281400 Sobic001G281400 Sobic009G149400--Sobic001G281400 Sobic003G285800 Sobic003G285800 Sobic009G149400--Sobic003G285800 Sobic002G267500 Sobic002G267500 Sobic009G149400--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic009G149400--Sobic004G272800 Sobic010G023800 Sobic010G023800 Sobic009G149400--Sobic010G023800 Sobic001G433700 Sobic001G433700 Sobic009G149400--Sobic001G433700 Sobic004G284500 Sobic004G284500 Sobic009G149400--Sobic004G284500 Sobic007G171000 Sobic007G171000 Sobic009G149400--Sobic007G171000 Sobic010G009300 Sobic010G009300 Sobic003G362100--Sobic010G009300 Sobic001G348700 Sobic001G348700 Sobic003G362100--Sobic001G348700 Sobic004G111800 Sobic004G111800 Sobic003G362100--Sobic004G111800 Sobic003G362100--Sobic005G038900 Sobic001G252300 Sobic001G252300 Sobic003G362100--Sobic001G252300 Sobic003G252800 Sobic003G252800 Sobic003G362100--Sobic003G252800 Sobic008G060050 Sobic008G060050 Sobic003G362100--Sobic008G060050 Sobic008G032100 Sobic008G032100 Sobic003G362100--Sobic008G032100 Sobic010G117900 Sobic010G117900 Sobic003G362100--Sobic010G117900 Sobic006G107200 Sobic006G107200 Sobic009G068200--Sobic006G107200 Sobic003G136000 Sobic003G136000 Sobic009G068200--Sobic003G136000 Sobic001G288800 Sobic001G288800 Sobic009G068200--Sobic001G288800 Sobic002G264400 Sobic002G264400 Sobic009G068200--Sobic002G264400 Sobic005G034400 Sobic005G034400 Sobic009G068200--Sobic005G034400 Sobic004G037000 Sobic004G037000 Sobic009G068200--Sobic004G037000 Sobic006G173900 Sobic006G173900 Sobic009G068200--Sobic006G173900 Sobic006G264300 Sobic006G264300 Sobic009G068200--Sobic006G264300 Sobic008G059200 Sobic008G059200 Sobic009G068200--Sobic008G059200 Sobic005G038900--Sobic003G362100 Sobic007G025500 Sobic007G025500 Sobic005G038900--Sobic007G025500 Sobic004G088551 Sobic004G088551 Sobic005G038900--Sobic004G088551 Sobic004G216600 Sobic004G216600 Sobic005G038900--Sobic004G216600 Sobic005G038900--Sobic006G173900 Sobic005G038900--Sobic008G032100 Sobic007G145600 Sobic007G145600 Sobic005G038900--Sobic007G145600 Sobic005G038900--Sobic010G009300 Sobic010G071900 Sobic010G071900 Sobic005G038900--Sobic010G071900 Sobic003G442900--Sobic004G017800 Sobic010G185500 Sobic010G185500 Sobic003G442900--Sobic010G185500 Sobic003G206900 Sobic003G206900 Sobic003G442900--Sobic003G206900 Sobic003G442900--Sobic010G071900 Sobic009G185800 Sobic009G185800 Sobic003G442900--Sobic009G185800 Sobic010G072000 Sobic010G072000 Sobic003G442900--Sobic010G072000 Sobic008G033600 Sobic008G033600 Sobic003G442900--Sobic008G033600 Sobic010G019900 Sobic010G019900 Sobic003G442900--Sobic010G019900 Sobic010G178200 Sobic010G178200 Sobic003G442900--Sobic010G178200 Sobic010G101500 Sobic010G101500 Sobic001G440700--Sobic010G101500 Sobic001G415000 Sobic001G415000 Sobic001G440700--Sobic001G415000 Sobic004G020000 Sobic004G020000 Sobic001G440700--Sobic004G020000 Sobic001G040800 Sobic001G040800 Sobic001G440700--Sobic001G040800 Sobic004G321900 Sobic004G321900 Sobic001G440700--Sobic004G321900 Sobic004G061800 Sobic004G061800 Sobic001G440700--Sobic004G061800 Sobic003G248600 Sobic003G248600 Sobic001G440700--Sobic003G248600 Sobic009G104000 Sobic009G104000 Sobic001G440700--Sobic009G104000 Sobic001G283500 Sobic001G283500 Sobic001G440700--Sobic001G283500 Sobic007G114200 Sobic007G114200 Sobic009G001400--Sobic007G114200 Sobic010G188100 Sobic010G188100 Sobic009G001400--Sobic010G188100 Sobic009G001400--Sobic001G040800 Sobic003G367451 Sobic003G367451 Sobic009G001400--Sobic003G367451 Sobic002G363100 Sobic002G363100 Sobic009G001400--Sobic002G363100 Sobic001G220400 Sobic001G220400 Sobic009G001400--Sobic001G220400 Sobic006G182100 Sobic006G182100 Sobic009G001400--Sobic006G182100 Sobic010G018400 Sobic010G018400 Sobic009G001400--Sobic010G018400 Sobic003G220600 Sobic003G220600 Sobic009G001400--Sobic003G220600 Sobic009G155200--Sobic007G171000 Sobic001G119000 Sobic001G119000 Sobic009G155200--Sobic001G119000 Sobic001G054400 Sobic001G054400 Sobic009G155200--Sobic001G054400 Sobic002G359300 Sobic002G359300 Sobic009G155200--Sobic002G359300 Sobic008G111100 Sobic008G111100 Sobic009G155200--Sobic008G111100 Sobic009G177800 Sobic009G177800 Sobic009G155200--Sobic009G177800 Sobic005G103300 Sobic005G103300 Sobic009G155200--Sobic005G103300 Sobic009G036700 Sobic009G036700 Sobic009G155200--Sobic009G036700 Sobic001G040200 Sobic001G040200 Sobic009G155200--Sobic001G040200 Sobic004G017800--Sobic003G442900 Sobic004G209900 Sobic004G209900 Sobic004G017800--Sobic004G209900 Sobic002G204200 Sobic002G204200 Sobic004G017800--Sobic002G204200 Sobic003G117900 Sobic003G117900 Sobic004G017800--Sobic003G117900 Sobic004G017800--Sobic010G185500 Sobic010G042100 Sobic010G042100 Sobic004G017800--Sobic010G042100 Sobic007G216100 Sobic007G216100 Sobic004G017800--Sobic007G216100 Sobic004G017800--Sobic001G220400 Sobic002G199900 Sobic002G199900 Sobic004G017800--Sobic002G199900
Octagon: transcription factors


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