Gene annotation
Transcriptome id Sobic.007G057500.1
Synonym
Functional annotation -
UniProt A0A1B6PFU1
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G245850 - -
2 Sobic.004G053200 Cupin domain containing protein, expressed -
3 Sobic.007G057700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
4 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
5 Sobic.001G051600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed -
6 Sobic.001G424200 protein kinase, putative, expressed -
7 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
8 Sobic.004G311500 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR12 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
9 Sobic.002G125300 up-regulated by silicon application(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
10 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
11 Sobic.006G146500 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
12 Sobic.004G249900 - -
13 Sobic.010G076700 expressed protein -
14 Sobic.001G093200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
15 Sobic.006G184800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
16 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
17 Sobic.001G476400 - -
18 Sobic.008G000500 exo70 exocyst complex subunit domain containing protein, expressed -
19 Sobic.003G352400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
20 Sobic.005G122500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@IQ calmodulin-binding and BAG domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G057500 Sobic007G057500 Sobic004G245850 Sobic004G245850 Sobic007G057500--Sobic004G245850 Sobic004G053200 Sobic004G053200 Sobic007G057500--Sobic004G053200 Sobic007G057700 Sobic007G057700 Sobic007G057500--Sobic007G057700 Sobic008G159100 Sobic008G159100 Sobic007G057500--Sobic008G159100 Sobic001G051600 Sobic001G051600 Sobic007G057500--Sobic001G051600 Sobic001G424200 Sobic001G424200 Sobic007G057500--Sobic001G424200 Sobic004G025000 Sobic004G025000 Sobic007G057500--Sobic004G025000 Sobic004G311500 Sobic004G311500 Sobic007G057500--Sobic004G311500 Sobic002G125300 Sobic002G125300 Sobic007G057500--Sobic002G125300 Sobic006G184800 Sobic006G184800 Sobic004G245850--Sobic006G184800 Sobic009G163900 Sobic009G163900 Sobic004G245850--Sobic009G163900 Sobic006G055600 Sobic006G055600 Sobic004G245850--Sobic006G055600 Sobic004G245850--Sobic008G159100 Sobic001G093200 Sobic001G093200 Sobic004G245850--Sobic001G093200 Sobic004G283201 Sobic004G283201 Sobic004G245850--Sobic004G283201 Sobic002G427400 Sobic002G427400 Sobic004G245850--Sobic002G427400 Sobic001G092600 Sobic001G092600 Sobic004G245850--Sobic001G092600 Sobic004G278200 Sobic004G278200 Sobic004G245850--Sobic004G278200 Sobic001G189700 Sobic001G189700 Sobic004G053200--Sobic001G189700 Sobic001G290400 Sobic001G290400 Sobic004G053200--Sobic001G290400 Sobic004G280800 Sobic004G280800 Sobic004G053200--Sobic004G280800 Sobic003G338900 Sobic003G338900 Sobic004G053200--Sobic003G338900 Sobic001G473900 Sobic001G473900 Sobic004G053200--Sobic001G473900 Sobic004G053200--Sobic004G025000 Sobic001G476400 Sobic001G476400 Sobic004G053200--Sobic001G476400 Sobic001G081600 Sobic001G081600 Sobic004G053200--Sobic001G081600 Sobic006G095600 Sobic006G095600 Sobic004G053200--Sobic006G095600 Sobic001G341600 Sobic001G341600 Sobic007G057700--Sobic001G341600 Sobic001G441100 Sobic001G441100 Sobic007G057700--Sobic001G441100 Sobic002G278500 Sobic002G278500 Sobic007G057700--Sobic002G278500 Sobic009G217600 Sobic009G217600 Sobic007G057700--Sobic009G217600 Sobic006G267000 Sobic006G267000 Sobic007G057700--Sobic006G267000 Sobic002G140300 Sobic002G140300 Sobic007G057700--Sobic002G140300 Sobic006G179500 Sobic006G179500 Sobic007G057700--Sobic006G179500 Sobic006G066200 Sobic006G066200 Sobic007G057700--Sobic006G066200 Sobic004G222500 Sobic004G222500 Sobic007G057700--Sobic004G222500 Sobic001G063600 Sobic001G063600 Sobic008G159100--Sobic001G063600 Sobic008G159100--Sobic002G427400 Sobic008G000500 Sobic008G000500 Sobic008G159100--Sobic008G000500 Sobic008G159100--Sobic001G051600 Sobic008G159100--Sobic001G476400 Sobic004G264500 Sobic004G264500 Sobic008G159100--Sobic004G264500 Sobic005G231700 Sobic005G231700 Sobic008G159100--Sobic005G231700 Sobic008G159100--Sobic004G245850 Sobic001G080300 Sobic001G080300 Sobic008G159100--Sobic001G080300 Sobic001G489600 Sobic001G489600 Sobic001G051600--Sobic001G489600 Sobic001G051600--Sobic001G476400 Sobic001G051600--Sobic006G095600 Sobic002G203000 Sobic002G203000 Sobic001G051600--Sobic002G203000 Sobic007G057100 Sobic007G057100 Sobic001G051600--Sobic007G057100 Sobic004G051166 Sobic004G051166 Sobic001G051600--Sobic004G051166 Sobic001G051600--Sobic008G159100 Sobic001G051600--Sobic001G081600 Sobic001G051600--Sobic004G025000 Sobic003G094200 Sobic003G094200 Sobic001G424200--Sobic003G094200 Sobic006G231332 Sobic006G231332 Sobic001G424200--Sobic006G231332 Sobic003G300800 Sobic003G300800 Sobic001G424200--Sobic003G300800 Sobic010G178500 Sobic010G178500 Sobic001G424200--Sobic010G178500 Sobic002G294700 Sobic002G294700 Sobic001G424200--Sobic002G294700 Sobic004G249900 Sobic004G249900 Sobic001G424200--Sobic004G249900 Sobic004G048100 Sobic004G048100 Sobic001G424200--Sobic004G048100 Sobic008G177800 Sobic008G177800 Sobic001G424200--Sobic008G177800 Sobic004G036600 Sobic004G036600 Sobic001G424200--Sobic004G036600 Sobic004G025000--Sobic001G081600 Sobic002G379400 Sobic002G379400 Sobic004G025000--Sobic002G379400 Sobic004G025000--Sobic006G095600 Sobic002G344700 Sobic002G344700 Sobic004G025000--Sobic002G344700 Sobic002G330300 Sobic002G330300 Sobic004G025000--Sobic002G330300 Sobic004G025000--Sobic001G476400 Sobic004G025000--Sobic001G063600 Sobic001G314700 Sobic001G314700 Sobic004G025000--Sobic001G314700 Sobic010G076700 Sobic010G076700 Sobic004G025000--Sobic010G076700 Sobic004G311500--Sobic006G179500 Sobic004G311500--Sobic002G140300 Sobic006G089300 Sobic006G089300 Sobic004G311500--Sobic006G089300 Sobic004G280900 Sobic004G280900 Sobic004G311500--Sobic004G280900 Sobic006G228300 Sobic006G228300 Sobic004G311500--Sobic006G228300 Sobic001G040200 Sobic001G040200 Sobic004G311500--Sobic001G040200 Sobic004G286600 Sobic004G286600 Sobic004G311500--Sobic004G286600 Sobic004G311500--Sobic009G217600 Sobic004G311500--Sobic002G294700 Sobic003G032900 Sobic003G032900 Sobic002G125300--Sobic003G032900 Sobic002G125300--Sobic008G159100 Sobic003G238000 Sobic003G238000 Sobic002G125300--Sobic003G238000 Sobic002G125300--Sobic004G025000 Sobic002G125300--Sobic001G476400 Sobic002G125300--Sobic001G063600 Sobic002G125300--Sobic006G055600 Sobic002G125300--Sobic004G283201 Sobic003G141800 Sobic003G141800 Sobic002G125300--Sobic003G141800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.