Gene annotation
Transcriptome id Sobic.001G208900.1
Synonym Sb01g018460
Functional annotation G-patch domain containing protein, expressed
UniProt C5WXD4
Pfam PF01585
Panther DB PTHR23106
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G08535 : D111/G-patch domain-containing protein
RAP-DB (Rice) LOC_Os10g35000.1 : G-patch domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006506
Brachypodium -
Barley -
Wheat TraesCS1B02G182600 , TraesCS1B02G182600
Populus -


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cDNA sequences
Sobic.001G208900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
2 Sobic.003G398300 mitochondrial import inner membrane translocase subunit Tim16, putative, expressed K17805: PAM16, mitochondrial import inner membrane translocase subunit TIM16
3 Sobic.010G042100 transcription elongation factor 1, putative, expressed -
4 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
5 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
6 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
7 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
8 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
9 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15
10 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
11 Sobic.002G159500 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
12 Sobic.001G106700 expressed protein -
13 Sobic.003G257600 transcription initiation factor TFIID subunit 11, putative, expressed K03135: transcription initiation factor TFIID subunit 11
14 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
15 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
16 Sobic.007G216100 expressed protein -
17 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
18 Sobic.001G175800 expressed protein -
19 Sobic.001G220400 SNF7 domain containing protein, putative, expressed K12192: charged multivesicular body protein 2B
20 Sobic.003G180300 expressed protein -


Gene co-expression network
sample Sobic001G208900 Sobic001G208900 Sobic001G395400 Sobic001G395400 Sobic001G208900--Sobic001G395400 Sobic003G398300 Sobic003G398300 Sobic001G208900--Sobic003G398300 Sobic010G042100 Sobic010G042100 Sobic001G208900--Sobic010G042100 Sobic010G101500 Sobic010G101500 Sobic001G208900--Sobic010G101500 Sobic004G293700 Sobic004G293700 Sobic001G208900--Sobic004G293700 Sobic001G314500 Sobic001G314500 Sobic001G208900--Sobic001G314500 Sobic001G501200 Sobic001G501200 Sobic001G208900--Sobic001G501200 Sobic007G096700 Sobic007G096700 Sobic001G208900--Sobic007G096700 Sobic003G015900 Sobic003G015900 Sobic001G208900--Sobic003G015900 Sobic007G166100 Sobic007G166100 Sobic001G395400--Sobic007G166100 Sobic002G400000 Sobic002G400000 Sobic001G395400--Sobic002G400000 Sobic006G263900 Sobic006G263900 Sobic001G395400--Sobic006G263900 Sobic003G416400 Sobic003G416400 Sobic001G395400--Sobic003G416400 Sobic010G168600 Sobic010G168600 Sobic001G395400--Sobic010G168600 Sobic003G077900 Sobic003G077900 Sobic001G395400--Sobic003G077900 Sobic010G000900 Sobic010G000900 Sobic001G395400--Sobic010G000900 Sobic001G057800 Sobic001G057800 Sobic001G395400--Sobic001G057800 Sobic009G165800 Sobic009G165800 Sobic001G395400--Sobic009G165800 Sobic003G398300--Sobic007G096700 Sobic003G323600 Sobic003G323600 Sobic003G398300--Sobic003G323600 Sobic001G459500 Sobic001G459500 Sobic003G398300--Sobic001G459500 Sobic003G124800 Sobic003G124800 Sobic003G398300--Sobic003G124800 Sobic007G045600 Sobic007G045600 Sobic003G398300--Sobic007G045600 Sobic002G090700 Sobic002G090700 Sobic003G398300--Sobic002G090700 Sobic009G198500 Sobic009G198500 Sobic003G398300--Sobic009G198500 Sobic004G300900 Sobic004G300900 Sobic003G398300--Sobic004G300900 Sobic006G141500 Sobic006G141500 Sobic003G398300--Sobic006G141500 Sobic002G045300 Sobic002G045300 Sobic010G042100--Sobic002G045300 Sobic001G433400 Sobic001G433400 Sobic010G042100--Sobic001G433400 Sobic003G117900 Sobic003G117900 Sobic010G042100--Sobic003G117900 Sobic009G135600 Sobic009G135600 Sobic010G042100--Sobic009G135600 Sobic002G385900 Sobic002G385900 Sobic010G042100--Sobic002G385900 Sobic003G367451 Sobic003G367451 Sobic010G042100--Sobic003G367451 Sobic003G253000 Sobic003G253000 Sobic010G042100--Sobic003G253000 Sobic004G020000 Sobic004G020000 Sobic010G042100--Sobic004G020000 Sobic001G461900 Sobic001G461900 Sobic010G042100--Sobic001G461900 Sobic010G188100 Sobic010G188100 Sobic010G101500--Sobic010G188100 Sobic003G220600 Sobic003G220600 Sobic010G101500--Sobic003G220600 Sobic001G220400 Sobic001G220400 Sobic010G101500--Sobic001G220400 Sobic010G101500--Sobic002G045300 Sobic010G101500--Sobic003G077900 Sobic001G440700 Sobic001G440700 Sobic010G101500--Sobic001G440700 Sobic002G122700 Sobic002G122700 Sobic010G101500--Sobic002G122700 Sobic010G101500--Sobic002G400000 Sobic009G219900 Sobic009G219900 Sobic010G101500--Sobic009G219900 Sobic010G253800 Sobic010G253800 Sobic004G293700--Sobic010G253800 Sobic004G079100 Sobic004G079100 Sobic004G293700--Sobic004G079100 Sobic010G083700 Sobic010G083700 Sobic004G293700--Sobic010G083700 Sobic001G054200 Sobic001G054200 Sobic004G293700--Sobic001G054200 Sobic004G248800 Sobic004G248800 Sobic004G293700--Sobic004G248800 Sobic009G171700 Sobic009G171700 Sobic004G293700--Sobic009G171700 Sobic002G264400 Sobic002G264400 Sobic004G293700--Sobic002G264400 Sobic004G293700--Sobic006G141500 Sobic004G293700--Sobic003G220600 Sobic006G212100 Sobic006G212100 Sobic001G314500--Sobic006G212100 Sobic001G314500--Sobic009G198500 Sobic007G168600 Sobic007G168600 Sobic001G314500--Sobic007G168600 Sobic001G388200 Sobic001G388200 Sobic001G314500--Sobic001G388200 Sobic006G232200 Sobic006G232200 Sobic001G314500--Sobic006G232200 Sobic001G314500--Sobic001G054200 Sobic009G004600 Sobic009G004600 Sobic001G314500--Sobic009G004600 Sobic010G205300 Sobic010G205300 Sobic001G314500--Sobic010G205300 Sobic003G217400 Sobic003G217400 Sobic001G314500--Sobic003G217400 Sobic001G501200--Sobic009G198500 Sobic001G501200--Sobic007G096700 Sobic001G005900 Sobic001G005900 Sobic001G501200--Sobic001G005900 Sobic001G501200--Sobic007G168600 Sobic001G428100 Sobic001G428100 Sobic001G501200--Sobic001G428100 Sobic001G501200--Sobic003G124800 Sobic001G502200 Sobic001G502200 Sobic001G501200--Sobic001G502200 Sobic001G501200--Sobic004G300900 Sobic004G130100 Sobic004G130100 Sobic001G501200--Sobic004G130100 Sobic007G096700--Sobic009G198500 Sobic004G327300 Sobic004G327300 Sobic007G096700--Sobic004G327300 Sobic009G122100 Sobic009G122100 Sobic007G096700--Sobic009G122100 Sobic007G096700--Sobic001G501200 Sobic007G096700--Sobic001G005900 Sobic007G096700--Sobic002G400000 Sobic004G130900 Sobic004G130900 Sobic007G096700--Sobic004G130900 Sobic001G175800 Sobic001G175800 Sobic007G096700--Sobic001G175800 Sobic007G096700--Sobic004G300900 Sobic001G051200 Sobic001G051200 Sobic003G015900--Sobic001G051200 Sobic003G015900--Sobic010G083700 Sobic002G352600 Sobic002G352600 Sobic003G015900--Sobic002G352600 Sobic001G047400 Sobic001G047400 Sobic003G015900--Sobic001G047400 Sobic003G015900--Sobic009G165800 Sobic004G086600 Sobic004G086600 Sobic003G015900--Sobic004G086600 Sobic004G253000 Sobic004G253000 Sobic003G015900--Sobic004G253000 Sobic003G015900--Sobic010G000900 Sobic009G246950 Sobic009G246950 Sobic003G015900--Sobic009G246950
Octagon: transcription factors


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