Gene annotation
Transcriptome id Sobic.003G257600.1
Synonym TAF11, Sb03g031220
Functional annotation transcription initiation factor TFIID subunit 11, putative, expressed
UniProt C5XGR0
Pfam PF04719
Panther DB PTHR13218
NCBI CDD -
KEGG Orthology K03135; transcription initiation factor TFIID subunit 11
Gene Ontology GO:0006367; transcription initiation from RNA polymerase II promoter GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT4G20280 : TBP-associated factor 11
RAP-DB (Rice) LOC_Os01g48810.1 : transcription initiation factor TFIID subunit 11, putative, expressed
MaizeGDB (Corn) Zm00025a038834 , Zm00025a028037
Brachypodium -
Barley HORVU3Hr1G062710.4 , HORVU3Hr1G062710.1 , HORVU3Hr1G062710.3 , HORVU3Hr1G062710.2
Wheat TraesCS3A02G267300 , TraesCS3D02G267500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G372700 DGCR14, putative, expressed K13118: protein DGCR14
2 Sobic.003G117300 LSM domain containing protein, expressed K12623: U6 snRNA-associated Sm-like protein LSm4
3 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
4 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
5 Sobic.009G131100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
6 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
7 Sobic.006G054500 membrane-anchored ubiquitin-fold protein, putative, expressed -
8 Sobic.001G428100 S-RNase-binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
9 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
10 Sobic.001G208900 G-patch domain containing protein, expressed -
11 Sobic.001G447900 OsFBO13 - F-box and other domain containing protein, expressed K10293: F-box protein 7
12 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
13 Sobic.010G258800 OsFBX206 - F-box domain containing protein, expressed -
14 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
15 Sobic.004G316900 autophagy-related protein 12, putative, expressed K08336: ubiquitin-like protein ATG12
16 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
17 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
18 Sobic.010G091900 -(PubMedID : 26320239)@HVA22, putative, expressed -
19 Sobic.004G001400 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
20 Sobic.009G011400 rab5-interacting protein like, putative, expressed -


Gene co-expression network
sample Sobic003G257600 Sobic003G257600 Sobic002G372700 Sobic002G372700 Sobic003G257600--Sobic002G372700 Sobic003G117300 Sobic003G117300 Sobic003G257600--Sobic003G117300 Sobic001G501200 Sobic001G501200 Sobic003G257600--Sobic001G501200 Sobic004G060600 Sobic004G060600 Sobic003G257600--Sobic004G060600 Sobic009G131100 Sobic009G131100 Sobic003G257600--Sobic009G131100 Sobic002G400000 Sobic002G400000 Sobic003G257600--Sobic002G400000 Sobic006G054500 Sobic006G054500 Sobic003G257600--Sobic006G054500 Sobic001G428100 Sobic001G428100 Sobic003G257600--Sobic001G428100 Sobic009G004600 Sobic009G004600 Sobic003G257600--Sobic009G004600 Sobic007G203700 Sobic007G203700 Sobic002G372700--Sobic007G203700 Sobic001G041100 Sobic001G041100 Sobic002G372700--Sobic001G041100 Sobic010G065400 Sobic010G065400 Sobic002G372700--Sobic010G065400 Sobic008G137600 Sobic008G137600 Sobic002G372700--Sobic008G137600 Sobic010G047400 Sobic010G047400 Sobic002G372700--Sobic010G047400 Sobic006G220700 Sobic006G220700 Sobic002G372700--Sobic006G220700 Sobic002G372700--Sobic003G257600 Sobic003G021200 Sobic003G021200 Sobic002G372700--Sobic003G021200 Sobic002G398800 Sobic002G398800 Sobic002G372700--Sobic002G398800 Sobic003G117300--Sobic004G060600 Sobic003G117300--Sobic001G428100 Sobic002G071000 Sobic002G071000 Sobic003G117300--Sobic002G071000 Sobic001G404100 Sobic001G404100 Sobic003G117300--Sobic001G404100 Sobic002G262000 Sobic002G262000 Sobic003G117300--Sobic002G262000 Sobic003G117300--Sobic001G501200 Sobic009G130400 Sobic009G130400 Sobic003G117300--Sobic009G130400 Sobic006G281200 Sobic006G281200 Sobic003G117300--Sobic006G281200 Sobic003G077900 Sobic003G077900 Sobic003G117300--Sobic003G077900 Sobic009G198500 Sobic009G198500 Sobic001G501200--Sobic009G198500 Sobic007G096700 Sobic007G096700 Sobic001G501200--Sobic007G096700 Sobic001G005900 Sobic001G005900 Sobic001G501200--Sobic001G005900 Sobic007G168600 Sobic007G168600 Sobic001G501200--Sobic007G168600 Sobic001G501200--Sobic001G428100 Sobic003G124800 Sobic003G124800 Sobic001G501200--Sobic003G124800 Sobic001G502200 Sobic001G502200 Sobic001G501200--Sobic001G502200 Sobic004G300900 Sobic004G300900 Sobic001G501200--Sobic004G300900 Sobic004G130100 Sobic004G130100 Sobic001G501200--Sobic004G130100 Sobic004G060600--Sobic003G077900 Sobic004G060600--Sobic002G400000 Sobic004G060600--Sobic009G131100 Sobic004G060600--Sobic001G428100 Sobic004G060600--Sobic007G203700 Sobic004G060600--Sobic009G198500 Sobic004G060600--Sobic007G168600 Sobic004G060600--Sobic003G117300 Sobic001G364600 Sobic001G364600 Sobic004G060600--Sobic001G364600 Sobic001G536500 Sobic001G536500 Sobic009G131100--Sobic001G536500 Sobic002G078400 Sobic002G078400 Sobic009G131100--Sobic002G078400 Sobic009G131100--Sobic004G060600 Sobic007G091000 Sobic007G091000 Sobic009G131100--Sobic007G091000 Sobic010G194900 Sobic010G194900 Sobic009G131100--Sobic010G194900 Sobic003G277000 Sobic003G277000 Sobic009G131100--Sobic003G277000 Sobic001G087900 Sobic001G087900 Sobic009G131100--Sobic001G087900 Sobic004G265700 Sobic004G265700 Sobic009G131100--Sobic004G265700 Sobic009G131100--Sobic006G281200 Sobic002G400000--Sobic007G168600 Sobic002G400000--Sobic003G077900 Sobic002G400000--Sobic009G198500 Sobic004G130900 Sobic004G130900 Sobic002G400000--Sobic004G130900 Sobic001G433400 Sobic001G433400 Sobic002G400000--Sobic001G433400 Sobic001G395400 Sobic001G395400 Sobic002G400000--Sobic001G395400 Sobic004G327300 Sobic004G327300 Sobic002G400000--Sobic004G327300 Sobic002G400000--Sobic009G004600 Sobic010G000900 Sobic010G000900 Sobic002G400000--Sobic010G000900 Sobic007G079700 Sobic007G079700 Sobic006G054500--Sobic007G079700 Sobic006G054500--Sobic009G004600 Sobic006G054500--Sobic004G060600 Sobic004G301900 Sobic004G301900 Sobic006G054500--Sobic004G301900 Sobic002G113900 Sobic002G113900 Sobic006G054500--Sobic002G113900 Sobic004G074300 Sobic004G074300 Sobic006G054500--Sobic004G074300 Sobic006G054500--Sobic001G364600 Sobic002G273900 Sobic002G273900 Sobic006G054500--Sobic002G273900 Sobic010G090900 Sobic010G090900 Sobic006G054500--Sobic010G090900 Sobic001G428100--Sobic006G281200 Sobic001G428100--Sobic001G502200 Sobic001G428100--Sobic001G501200 Sobic001G428100--Sobic004G060600 Sobic001G428100--Sobic009G198500 Sobic001G428100--Sobic009G004600 Sobic003G440800 Sobic003G440800 Sobic001G428100--Sobic003G440800 Sobic001G315500 Sobic001G315500 Sobic001G428100--Sobic001G315500 Sobic001G428100--Sobic003G117300 Sobic009G004600--Sobic002G400000 Sobic004G356900 Sobic004G356900 Sobic009G004600--Sobic004G356900 Sobic003G217400 Sobic003G217400 Sobic009G004600--Sobic003G217400 Sobic009G004600--Sobic009G198500 Sobic001G263000 Sobic001G263000 Sobic009G004600--Sobic001G263000 Sobic001G314500 Sobic001G314500 Sobic009G004600--Sobic001G314500 Sobic009G004600--Sobic002G113900 Sobic010G205300 Sobic010G205300 Sobic009G004600--Sobic010G205300 Sobic009G004600--Sobic007G168600
Octagon: transcription factors


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