Gene annotation
Transcriptome id Sobic.001G288601.1
Synonym -
Functional annotation -
UniProt A0A1Z5S844
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF149
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G35420 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os10g42390.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a003475
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G022900 methyltransferase domain containing protein, expressed -
2 Sobic.010G225001 - -
3 Sobic.007G003000 no apical meristem protein, putative, expressed -
4 Sobic.004G290300 anthranilate phosphoribosyltransferase, putative, expressed -
5 Sobic.007G003700 cytochrome P450, putative, expressed -
6 Sobic.007G090424 - K01061: carboxymethylenebutenolidase
7 Sobic.007G190200 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
8 Sobic.002G342600 cytochrome c, putative, expressed K08906: cytochrome c6
9 Sobic.001G345900 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.001G208600 receptor kinase like protein, putative, expressed -
11 Sobic.001G343300 3-beta-hydroxy-delta5-steroid dehydrogenase (At)(PubMedID : 27208977)@NAD dependent epimerase/dehydratase family protein, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
12 Sobic.001G343400 3-beta-hydroxy-delta5-steroid dehydrogenase (At)(PubMedID : 27208977)@sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
13 Sobic.009G119400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@glycosyl hydrolases family 17, putative, expressed -
14 Sobic.003G085200 expressed protein -
15 Sobic.003G006100 Leucine Rich Repeat family protein, expressed -
16 Sobic.002G072200 expressed protein -
17 Sobic.003G191000 FAD dependent oxidoreductase domain containing protein, expressed K03146: THI4, cysteine-dependent adenosine diphosphate thiazole synthase
18 Sobic.005G165400 OsSub17 - Putative Subtilisin homologue, expressed -
19 Sobic.001G199632 - -
20 Sobic.004G194800 - -


Gene co-expression network
sample Sobic001G288601 Sobic001G288601 Sobic007G022900 Sobic007G022900 Sobic001G288601--Sobic007G022900 Sobic010G225001 Sobic010G225001 Sobic001G288601--Sobic010G225001 Sobic007G003000 Sobic007G003000 Sobic001G288601--Sobic007G003000 Sobic004G290300 Sobic004G290300 Sobic001G288601--Sobic004G290300 Sobic007G003700 Sobic007G003700 Sobic001G288601--Sobic007G003700 Sobic007G090424 Sobic007G090424 Sobic001G288601--Sobic007G090424 Sobic007G190200 Sobic007G190200 Sobic001G288601--Sobic007G190200 Sobic002G342600 Sobic002G342600 Sobic001G288601--Sobic002G342600 Sobic001G345900 Sobic001G345900 Sobic001G288601--Sobic001G345900 Sobic007G022900--Sobic001G288601 Sobic003G248300 Sobic003G248300 Sobic007G022900--Sobic003G248300 Sobic008G040400 Sobic008G040400 Sobic007G022900--Sobic008G040400 Sobic004G129100 Sobic004G129100 Sobic007G022900--Sobic004G129100 Sobic010G018500 Sobic010G018500 Sobic007G022900--Sobic010G018500 Sobic001G443300 Sobic001G443300 Sobic007G022900--Sobic001G443300 Sobic009G244900 Sobic009G244900 Sobic007G022900--Sobic009G244900 Sobic009G228600 Sobic009G228600 Sobic007G022900--Sobic009G228600 Sobic004G356300 Sobic004G356300 Sobic007G022900--Sobic004G356300 Sobic001G012200 Sobic001G012200 Sobic010G225001--Sobic001G012200 Sobic007G181000 Sobic007G181000 Sobic010G225001--Sobic007G181000 Sobic001G012300 Sobic001G012300 Sobic010G225001--Sobic001G012300 Sobic001G012600 Sobic001G012600 Sobic010G225001--Sobic001G012600 Sobic001G334900 Sobic001G334900 Sobic010G225001--Sobic001G334900 Sobic010G225001--Sobic001G345900 Sobic004G328900 Sobic004G328900 Sobic010G225001--Sobic004G328900 Sobic006G038850 Sobic006G038850 Sobic010G225001--Sobic006G038850 Sobic005G165400 Sobic005G165400 Sobic010G225001--Sobic005G165400 Sobic005G005800 Sobic005G005800 Sobic007G003000--Sobic005G005800 Sobic001G058000 Sobic001G058000 Sobic007G003000--Sobic001G058000 Sobic006G194700 Sobic006G194700 Sobic007G003000--Sobic006G194700 Sobic001G479600 Sobic001G479600 Sobic007G003000--Sobic001G479600 Sobic004G072400 Sobic004G072400 Sobic007G003000--Sobic004G072400 Sobic003G125000 Sobic003G125000 Sobic007G003000--Sobic003G125000 Sobic001G086200 Sobic001G086200 Sobic007G003000--Sobic001G086200 Sobic001G392000 Sobic001G392000 Sobic007G003000--Sobic001G392000 Sobic003G082700 Sobic003G082700 Sobic007G003000--Sobic003G082700 Sobic005G145100 Sobic005G145100 Sobic004G290300--Sobic005G145100 Sobic001G129600 Sobic001G129600 Sobic004G290300--Sobic001G129600 Sobic002G028500 Sobic002G028500 Sobic004G290300--Sobic002G028500 Sobic001G140800 Sobic001G140800 Sobic004G290300--Sobic001G140800 Sobic001G388000 Sobic001G388000 Sobic004G290300--Sobic001G388000 Sobic001G208600 Sobic001G208600 Sobic004G290300--Sobic001G208600 Sobic004G266700 Sobic004G266700 Sobic004G290300--Sobic004G266700 Sobic001G343400 Sobic001G343400 Sobic004G290300--Sobic001G343400 Sobic005G112000 Sobic005G112000 Sobic004G290300--Sobic005G112000 Sobic002G178400 Sobic002G178400 Sobic007G003700--Sobic002G178400 Sobic007G003700--Sobic007G090424 Sobic005G110436 Sobic005G110436 Sobic007G003700--Sobic005G110436 Sobic009G115050 Sobic009G115050 Sobic007G003700--Sobic009G115050 Sobic001G170900 Sobic001G170900 Sobic007G003700--Sobic001G170900 Sobic002G329500 Sobic002G329500 Sobic007G003700--Sobic002G329500 Sobic004G105800 Sobic004G105800 Sobic007G003700--Sobic004G105800 Sobic001G003600 Sobic001G003600 Sobic007G003700--Sobic001G003600 Sobic003G058600 Sobic003G058600 Sobic007G003700--Sobic003G058600 Sobic001G127700 Sobic001G127700 Sobic007G090424--Sobic001G127700 Sobic006G084500 Sobic006G084500 Sobic007G090424--Sobic006G084500 Sobic006G172700 Sobic006G172700 Sobic007G090424--Sobic006G172700 Sobic008G123600 Sobic008G123600 Sobic007G090424--Sobic008G123600 Sobic003G006100 Sobic003G006100 Sobic007G090424--Sobic003G006100 Sobic005G056201 Sobic005G056201 Sobic007G090424--Sobic005G056201 Sobic007G009600 Sobic007G009600 Sobic007G090424--Sobic007G009600 Sobic007G090424--Sobic001G003600 Sobic004G060700 Sobic004G060700 Sobic007G090424--Sobic004G060700 Sobic009G070700 Sobic009G070700 Sobic007G190200--Sobic009G070700 Sobic009G070600 Sobic009G070600 Sobic007G190200--Sobic009G070600 Sobic007G190200--Sobic001G012200 Sobic004G257700 Sobic004G257700 Sobic007G190200--Sobic004G257700 Sobic007G190200--Sobic001G345900 Sobic007G190200--Sobic001G012600 Sobic003G007800 Sobic003G007800 Sobic007G190200--Sobic003G007800 Sobic007G130800 Sobic007G130800 Sobic007G190200--Sobic007G130800 Sobic007G190200--Sobic001G334900 Sobic002G192700 Sobic002G192700 Sobic002G342600--Sobic002G192700 Sobic003G365900 Sobic003G365900 Sobic002G342600--Sobic003G365900 Sobic001G343300 Sobic001G343300 Sobic002G342600--Sobic001G343300 Sobic010G219500 Sobic010G219500 Sobic002G342600--Sobic010G219500 Sobic003G328000 Sobic003G328000 Sobic002G342600--Sobic003G328000 Sobic005G190800 Sobic005G190800 Sobic002G342600--Sobic005G190800 Sobic008G058500 Sobic008G058500 Sobic002G342600--Sobic008G058500 Sobic004G038300 Sobic004G038300 Sobic002G342600--Sobic004G038300 Sobic001G199632 Sobic001G199632 Sobic002G342600--Sobic001G199632 Sobic001G345900--Sobic001G334900 Sobic002G347300 Sobic002G347300 Sobic001G345900--Sobic002G347300 Sobic001G345900--Sobic001G012200 Sobic001G345900--Sobic001G012600 Sobic002G072200 Sobic002G072200 Sobic001G345900--Sobic002G072200 Sobic001G345900--Sobic004G257700 Sobic004G328601 Sobic004G328601 Sobic001G345900--Sobic004G328601 Sobic009G033400 Sobic009G033400 Sobic001G345900--Sobic009G033400 Sobic001G345900--Sobic001G012300
Octagon: transcription factors


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