Gene annotation
Transcriptome id Sobic.001G326900.1,Sobic.001G326900.4,Sobic.001G326900.2,Sobic.001G326900.3
Synonym PPDK;PPDK, PPDK, Sb01g031660
Functional annotation PPDK (PubMedID : 19549309)
phyruvate phosphate dikinase (PubMedID : 26904072)
- (PubMedID : 26976818)
pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
UniProt A0A1B6QME4 , A0A1B6QME7 , C5WVJ1 , A0A1B6QMD3
Pfam PF00391 PF01326 PF02896 PF02896 PF00391 PF01326
Panther DB PTHR22931 PTHR22931:SF9
NCBI CDD -
KEGG Orthology K01006; pyruvate, orthophosphate dikinase
Gene Ontology GO:0016772; transferase activity, transferring phosphorus-containing groups GO:0016310phosphorylation GO:0016301kinase activity GO:0005524ATP binding GO:0006090pyruvate metabolic process


Orthologs (automatic annotation)
TAIR AT4G15530 : pyruvate orthophosphate dikinase
RAP-DB (Rice) LOC_Os03g31750.1 : pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a043657 , Zm00025a037486
Brachypodium KQK06324 , PNT71289 , KQK06326
Barley HORVU1Hr1G061160.1 , HORVU1Hr1G061160.3 , HORVU1Hr1G061160.2 , HORVU1Hr1G061160.5 , HORVU1Hr1G061160.4 , HORVU1Hr1G061160.7 , HORVU1Hr1G061160.6 , HORVU1Hr1G061160.9 , HORVU1Hr1G061160.8 , HORVU1Hr1G061160.15 , HORVU1Hr1G061160.14 , HORVU1Hr1G061160.17 , HORVU1Hr1G061160.16 , HORVU1Hr1G061160.11 , HORVU1Hr1G061160.10 , HORVU1Hr1G061160.13 , HORVU1Hr1G061160.12 , HORVU1Hr1G061160.19 , HORVU1Hr1G061160.18
Wheat TraesCS1B02G264900 , TraesCS1B02G264900 , TraesCS1B02G264900 , TraesCS1D02G252900 , TraesCS1D02G252900 , TraesCS1A02G253400 , TraesCS1A02G253400 , TraesCS1A02G253400 , TraesCS1A02G253200 , TraesCS1A02G253200
Populus PNT14381 , PNT14373 , PNT14375 , PNT14374 , PNT14377 , PNT14376 , PNT14379 , PNT14378 , PNT14382 , PNT14380


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G117000 late embryogenesis abundant protein, putative, expressed -
2 Sobic.003G036950 - -
3 Sobic.002G284200 peroxisomal multifunctional enzyme type 2, putative, expressed -
4 Sobic.010G218100 expressed protein -
5 Sobic.007G150200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MTD1, putative, expressed -
6 Sobic.002G082900 transmembrane amino acid transporter protein, putative, expressed K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
7 Sobic.005G117901 - -
8 Sobic.010G218500 bZIP transcription factor domain containing protein, expressed -
9 Sobic.001G222300 cyclin-dependent kinase inhibitor, putative, expressed -
10 Sobic.005G162600 zinc knuckle domain containing protein, expressed -
11 Sobic.001G243901 - -
12 Sobic.007G211000 helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.002G041333 - -
14 Sobic.005G130450 - -
15 Sobic.007G023700 MA3 domain containing protein, expressed -
16 Sobic.004G188300 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS2-11 - C2H2 zinc finger protein, expressed -
17 Sobic.001G515600 expressed protein -
18 Sobic.003G121400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@expressed protein -
19 Sobic.002G221900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
20 Sobic.001G024200 lipase class 3 family protein, putative, expressed -


Gene co-expression network
sample Sobic001G326900 Sobic001G326900 Sobic003G117000 Sobic003G117000 Sobic001G326900--Sobic003G117000 Sobic003G036950 Sobic003G036950 Sobic001G326900--Sobic003G036950 Sobic002G284200 Sobic002G284200 Sobic001G326900--Sobic002G284200 Sobic010G218100 Sobic010G218100 Sobic001G326900--Sobic010G218100 Sobic007G150200 Sobic007G150200 Sobic001G326900--Sobic007G150200 Sobic002G082900 Sobic002G082900 Sobic001G326900--Sobic002G082900 Sobic005G117901 Sobic005G117901 Sobic001G326900--Sobic005G117901 Sobic010G218500 Sobic010G218500 Sobic001G326900--Sobic010G218500 Sobic001G222300 Sobic001G222300 Sobic001G326900--Sobic001G222300 Sobic007G211000 Sobic007G211000 Sobic003G117000--Sobic007G211000 Sobic003G117000--Sobic002G284200 Sobic003G117000--Sobic007G150200 Sobic003G117000--Sobic005G117901 Sobic003G117000--Sobic010G218500 Sobic001G024200 Sobic001G024200 Sobic003G117000--Sobic001G024200 Sobic001G243901 Sobic001G243901 Sobic003G117000--Sobic001G243901 Sobic003G121400 Sobic003G121400 Sobic003G117000--Sobic003G121400 Sobic003G117000--Sobic003G036950 Sobic008G157950 Sobic008G157950 Sobic003G036950--Sobic008G157950 Sobic004G164600 Sobic004G164600 Sobic003G036950--Sobic004G164600 Sobic005G110430 Sobic005G110430 Sobic003G036950--Sobic005G110430 Sobic008G042250 Sobic008G042250 Sobic003G036950--Sobic008G042250 Sobic002G221700 Sobic002G221700 Sobic003G036950--Sobic002G221700 Sobic001G345333 Sobic001G345333 Sobic003G036950--Sobic001G345333 Sobic004G212800 Sobic004G212800 Sobic003G036950--Sobic004G212800 Sobic002G007250 Sobic002G007250 Sobic003G036950--Sobic002G007250 Sobic004G112500 Sobic004G112500 Sobic003G036950--Sobic004G112500 Sobic002G284200--Sobic003G117000 Sobic002G284200--Sobic007G150200 Sobic001G451000 Sobic001G451000 Sobic002G284200--Sobic001G451000 Sobic002G284200--Sobic007G211000 Sobic003G093600 Sobic003G093600 Sobic002G284200--Sobic003G093600 Sobic007G078000 Sobic007G078000 Sobic002G284200--Sobic007G078000 Sobic001G439500 Sobic001G439500 Sobic002G284200--Sobic001G439500 Sobic002G165300 Sobic002G165300 Sobic002G284200--Sobic002G165300 Sobic002G283300 Sobic002G283300 Sobic002G284200--Sobic002G283300 Sobic010G218100--Sobic010G218500 Sobic010G218100--Sobic003G117000 Sobic006G122400 Sobic006G122400 Sobic010G218100--Sobic006G122400 Sobic004G188300 Sobic004G188300 Sobic010G218100--Sobic004G188300 Sobic010G218100--Sobic007G150200 Sobic010G218100--Sobic001G222300 Sobic002G039500 Sobic002G039500 Sobic010G218100--Sobic002G039500 Sobic002G253500 Sobic002G253500 Sobic010G218100--Sobic002G253500 Sobic009G242800 Sobic009G242800 Sobic010G218100--Sobic009G242800 Sobic007G150200--Sobic002G284200 Sobic007G150200--Sobic003G117000 Sobic007G023700 Sobic007G023700 Sobic007G150200--Sobic007G023700 Sobic007G150200--Sobic003G093600 Sobic007G150200--Sobic004G188300 Sobic001G225100 Sobic001G225100 Sobic007G150200--Sobic001G225100 Sobic005G167300 Sobic005G167300 Sobic007G150200--Sobic005G167300 Sobic007G150200--Sobic010G218500 Sobic007G150200--Sobic010G218100 Sobic002G082900--Sobic002G284200 Sobic002G082900--Sobic001G326900 Sobic001G028400 Sobic001G028400 Sobic002G082900--Sobic001G028400 Sobic005G162600 Sobic005G162600 Sobic002G082900--Sobic005G162600 Sobic002G082900--Sobic001G222300 Sobic009G027000 Sobic009G027000 Sobic002G082900--Sobic009G027000 Sobic002G082900--Sobic001G451000 Sobic002G082900--Sobic010G218100 Sobic001G427800 Sobic001G427800 Sobic002G082900--Sobic001G427800 Sobic005G117901--Sobic001G243901 Sobic008G101350 Sobic008G101350 Sobic005G117901--Sobic008G101350 Sobic004G096200 Sobic004G096200 Sobic005G117901--Sobic004G096200 Sobic005G130450 Sobic005G130450 Sobic005G117901--Sobic005G130450 Sobic004G279300 Sobic004G279300 Sobic005G117901--Sobic004G279300 Sobic001G515600 Sobic001G515600 Sobic005G117901--Sobic001G515600 Sobic005G117901--Sobic007G211000 Sobic002G048300 Sobic002G048300 Sobic005G117901--Sobic002G048300 Sobic010G248200 Sobic010G248200 Sobic010G218500--Sobic010G248200 Sobic010G218500--Sobic001G243901 Sobic010G218500--Sobic005G117901 Sobic010G218500--Sobic002G253500 Sobic010G218500--Sobic008G101350 Sobic010G218500--Sobic004G096200 Sobic010G218500--Sobic007G211000 Sobic002G108800 Sobic002G108800 Sobic010G218500--Sobic002G108800 Sobic010G218500--Sobic001G345333 Sobic007G037100 Sobic007G037100 Sobic001G222300--Sobic007G037100 Sobic001G222300--Sobic005G162600 Sobic008G101800 Sobic008G101800 Sobic001G222300--Sobic008G101800 Sobic001G222300--Sobic007G211000 Sobic001G222300--Sobic004G188300 Sobic002G001600 Sobic002G001600 Sobic001G222300--Sobic002G001600 Sobic001G222300--Sobic001G451000 Sobic008G116500 Sobic008G116500 Sobic001G222300--Sobic008G116500 Sobic001G222300--Sobic002G284200
Octagon: transcription factors


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