Gene annotation
| Transcriptome id | Sobic.002G082900.1 |
|---|---|
| Synonym | Sb02g006930, ANT1 |
| Functional annotation | transmembrane amino acid transporter protein, putative, expressed |
| UniProt | C5XDI1 |
| Pfam | PF01490 |
| Panther DB | PTHR22950 PTHR22950:SF325 |
| NCBI CDD | KOG1304; Amino acid transporters |
| KEGG Orthology | K14209; SLC36A, solute carrier family 36 (proton-coupled amino acid transporter) |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G11900 : aromatic and neutral transporter 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os07g12770.1 : transmembrane amino acid transporter protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a045445 |
| Brachypodium | KQJ89698 , KQJ89699 , PNT64295 , PNT64294 , PNT73906 , PNT64293 , KQJ89700 , KQK12482 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G284200 | peroxisomal multifunctional enzyme type 2, putative, expressed | - |
| 2 | Sobic.001G326900 | PPDK(PubMedID : 19549309)@phyruvate phosphate dikinase(PubMedID : 26904072)@-(PubMedID : 26976818)@pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed | K01006: pyruvate, orthophosphate dikinase |
| 3 | Sobic.001G028400 | domain of unknown function domain containing protein, expressed | - |
| 4 | Sobic.005G162600 | zinc knuckle domain containing protein, expressed | - |
| 5 | Sobic.001G222300 | cyclin-dependent kinase inhibitor, putative, expressed | - |
| 6 | Sobic.009G027000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed | K00253: IVD, isovaleryl-CoA dehydrogenase |
| 7 | Sobic.001G451000 | two-component response regulator, putative, expressed | K14491: two-component response regulator ARR-B family |
| 8 | Sobic.010G218100 | expressed protein | - |
| 9 | Sobic.001G427800 | tyrosine protein kinase domain containing protein, putative, expressed | - |
| 10 | Sobic.001G478300 | modifier of rudimentary protein, expressed | K12185: ESCRT-I complex subunit VPS37 |
| 11 | Sobic.006G122400 | uncharacterized glycosyltransferase, putative, expressed | - |
| 12 | Sobic.010G260500 | pre-mRNA-splicing factor syf2, putative, expressed | K12868: pre-mRNA-splicing factor SYF2 |
| 13 | Sobic.001G056200 | expressed protein | - |
| 14 | Sobic.003G117000 | late embryogenesis abundant protein, putative, expressed | - |
| 15 | Sobic.007G150200 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MTD1, putative, expressed | - |
| 16 | Sobic.008G174300 | GTPase of unknown function domain containing protein, putative, expressed | K14539: large subunit GTPase 1 |
| 17 | Sobic.004G198000 | protein kinase domain containing protein, expressed | K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5 |
| 18 | Sobic.010G042900 | expressed protein | - |
| 19 | Sobic.004G297400 | enoyl-CoA hydratase/isomerase family protein, putative, expressed | K05607: methylglutaconyl-CoA hydratase |
| 20 | Sobic.004G188300 | regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS2-11 - C2H2 zinc finger protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
