Gene annotation
Transcriptome id Sobic.001G352300.1
Synonym serine/arginine-rich (SR) family, SC35, sb-SR30, ATSC35, Sb01g033710
Functional annotation Putative splicing factor (PubMedID : 24356560)
RNA recognition motif containing protein, expressed
UniProt A0A1B6QMT9
Pfam PF00076
Panther DB PTHR23147 PTHR23147:SF9
NCBI CDD KOG4207; Predicted splicing factor, SR protein superfamily
KEGG Orthology K12891; splicing factor, arginine/serine-rich 2
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G64200 : ortholog of human splicing factor SC35
RAP-DB (Rice) LOC_Os03g27030.2 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a002710
Brachypodium KQJ98743
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
2 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
3 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
4 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
5 Sobic.004G198100 expressed protein -
6 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
7 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
8 Sobic.001G091500 expressed protein -
9 Sobic.002G222500 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
10 Sobic.001G398400 expressed protein -
11 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
12 Sobic.004G339500 kinesin motor domain containing protein, putative, expressed -
13 Sobic.007G027900 chloroplast unusual positioning protein, putative, expressed -
14 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
15 Sobic.010G129700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
16 Sobic.002G313000 targeting protein-related, putative, expressed K16812: targeting protein for Xklp2
17 Sobic.003G314900 flap endonuclease, putative, expressed K10746: exonuclease 1
18 Sobic.005G005700 inactive receptor kinase At2g26730 precursor, putative, expressed -
19 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
20 Sobic.008G114900 rhoGAP domain containing protein, expressed -


Gene co-expression network
sample Sobic001G352300 Sobic001G352300 Sobic003G260700 Sobic003G260700 Sobic001G352300--Sobic003G260700 Sobic007G168900 Sobic007G168900 Sobic001G352300--Sobic007G168900 Sobic004G257600 Sobic004G257600 Sobic001G352300--Sobic004G257600 Sobic009G184200 Sobic009G184200 Sobic001G352300--Sobic009G184200 Sobic004G198100 Sobic004G198100 Sobic001G352300--Sobic004G198100 Sobic004G271300 Sobic004G271300 Sobic001G352300--Sobic004G271300 Sobic005G144600 Sobic005G144600 Sobic001G352300--Sobic005G144600 Sobic001G091500 Sobic001G091500 Sobic001G352300--Sobic001G091500 Sobic002G222500 Sobic002G222500 Sobic001G352300--Sobic002G222500 Sobic001G170800 Sobic001G170800 Sobic003G260700--Sobic001G170800 Sobic003G260700--Sobic004G257600 Sobic004G339500 Sobic004G339500 Sobic003G260700--Sobic004G339500 Sobic001G398400 Sobic001G398400 Sobic003G260700--Sobic001G398400 Sobic003G260700--Sobic004G198100 Sobic003G260700--Sobic004G271300 Sobic008G006800 Sobic008G006800 Sobic003G260700--Sobic008G006800 Sobic001G177900 Sobic001G177900 Sobic003G260700--Sobic001G177900 Sobic002G313000 Sobic002G313000 Sobic003G260700--Sobic002G313000 Sobic005G000500 Sobic005G000500 Sobic007G168900--Sobic005G000500 Sobic007G168900--Sobic005G144600 Sobic007G168900--Sobic004G271300 Sobic007G168900--Sobic001G177900 Sobic003G314900 Sobic003G314900 Sobic007G168900--Sobic003G314900 Sobic003G294500 Sobic003G294500 Sobic007G168900--Sobic003G294500 Sobic007G168900--Sobic003G260700 Sobic010G008900 Sobic010G008900 Sobic007G168900--Sobic010G008900 Sobic010G147700 Sobic010G147700 Sobic007G168900--Sobic010G147700 Sobic004G257600--Sobic003G260700 Sobic003G387700 Sobic003G387700 Sobic004G257600--Sobic003G387700 Sobic004G257600--Sobic001G398400 Sobic004G257600--Sobic001G177900 Sobic004G257600--Sobic004G198100 Sobic004G257600--Sobic001G170800 Sobic003G444100 Sobic003G444100 Sobic004G257600--Sobic003G444100 Sobic004G257600--Sobic007G168900 Sobic004G257600--Sobic004G339500 Sobic002G204400 Sobic002G204400 Sobic009G184200--Sobic002G204400 Sobic010G105400 Sobic010G105400 Sobic009G184200--Sobic010G105400 Sobic009G184200--Sobic001G398400 Sobic003G393100 Sobic003G393100 Sobic009G184200--Sobic003G393100 Sobic010G129700 Sobic010G129700 Sobic009G184200--Sobic010G129700 Sobic003G032200 Sobic003G032200 Sobic009G184200--Sobic003G032200 Sobic009G184200--Sobic001G170800 Sobic007G007800 Sobic007G007800 Sobic009G184200--Sobic007G007800 Sobic009G184200--Sobic003G260700 Sobic004G198100--Sobic003G260700 Sobic010G119300 Sobic010G119300 Sobic004G198100--Sobic010G119300 Sobic004G198100--Sobic001G398400 Sobic008G125700 Sobic008G125700 Sobic004G198100--Sobic008G125700 Sobic004G198100--Sobic004G257600 Sobic004G198100--Sobic001G170800 Sobic004G198100--Sobic004G339500 Sobic004G198100--Sobic002G313000 Sobic004G198100--Sobic004G271300 Sobic004G271300--Sobic007G168900 Sobic004G271300--Sobic005G000500 Sobic004G271300--Sobic003G260700 Sobic004G271300--Sobic001G170800 Sobic005G005700 Sobic005G005700 Sobic004G271300--Sobic005G005700 Sobic004G271300--Sobic001G398400 Sobic004G271300--Sobic008G006800 Sobic004G271300--Sobic001G177900 Sobic004G271300--Sobic005G144600 Sobic005G144600--Sobic007G168900 Sobic005G144600--Sobic010G105400 Sobic005G144600--Sobic003G294500 Sobic005G144600--Sobic005G000500 Sobic005G144600--Sobic003G314900 Sobic005G144600--Sobic001G177900 Sobic004G047100 Sobic004G047100 Sobic005G144600--Sobic004G047100 Sobic005G144600--Sobic004G271300 Sobic003G179500 Sobic003G179500 Sobic005G144600--Sobic003G179500 Sobic002G426800 Sobic002G426800 Sobic001G091500--Sobic002G426800 Sobic001G091500--Sobic003G387700 Sobic009G120700 Sobic009G120700 Sobic001G091500--Sobic009G120700 Sobic001G091500--Sobic003G260700 Sobic001G091500--Sobic004G047100 Sobic001G091500--Sobic002G222500 Sobic001G091500--Sobic004G339500 Sobic001G091500--Sobic010G119300 Sobic001G091500--Sobic004G198100 Sobic002G222500--Sobic001G091500 Sobic008G114900 Sobic008G114900 Sobic002G222500--Sobic008G114900 Sobic010G269700 Sobic010G269700 Sobic002G222500--Sobic010G269700 Sobic002G222500--Sobic003G387700 Sobic010G241100 Sobic010G241100 Sobic002G222500--Sobic010G241100 Sobic002G222500--Sobic003G444100 Sobic004G313200 Sobic004G313200 Sobic002G222500--Sobic004G313200 Sobic006G219500 Sobic006G219500 Sobic002G222500--Sobic006G219500 Sobic002G222500--Sobic003G032200
Octagon: transcription factors


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