Gene annotation
Transcriptome id Sobic.001G359800.1
Synonym Sb01g034370
Functional annotation transcription regulator, putative, expressed
UniProt C5WYP9
Pfam PF04504
Panther DB PTHR31662 PTHR31662:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G28040 : DNA-binding storekeeper protein-related transcriptional regulator
RAP-DB (Rice) LOC_Os03g25430.1 : transcription regulator, putative, expressed
MaizeGDB (Corn) Zm00025a052308 , Zm00025a048897 , Zm00025a015284 , Zm00025a002630
Brachypodium KQK21550
Barley HORVU2Hr1G027390.3 , HORVU2Hr1G027390.2 , HORVU2Hr1G027390.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G359800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G182101 "TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054) -
2 Sobic.007G224300 RING finger protein, putative, expressed -
3 Sobic.003G055000 pentatricopeptide, putative, expressed -
4 Sobic.005G208900 expressed protein K11968: ariadne-1
5 Sobic.007G139900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G243732 - -
7 Sobic.004G323600 "SMG1(Ortholog in rice:Duan et al., 2014)"(PubMedID : 31659892)@STE_MEK_ste7_MAP2K.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13413: mitogen-activated protein kinase kinase 4/5
8 Sobic.009G182500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.004G268900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.003G077800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
11 Sobic.001G284425 - -
12 Sobic.010G116900 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -
13 Sobic.007G165701 - -
14 Sobic.007G223200 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
15 Sobic.010G052600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.009G187600 methyltransferase domain containing protein, expressed -
17 Sobic.003G186500 N-rich protein, putative, expressed -
18 Sobic.010G207250 - -
19 Sobic.001G154600 expressed protein -
20 Sobic.005G181600 expressed protein -


Gene co-expression network
sample Sobic001G359800 Sobic001G359800 Sobic007G182101 Sobic007G182101 Sobic001G359800--Sobic007G182101 Sobic007G224300 Sobic007G224300 Sobic001G359800--Sobic007G224300 Sobic003G055000 Sobic003G055000 Sobic001G359800--Sobic003G055000 Sobic005G208900 Sobic005G208900 Sobic001G359800--Sobic005G208900 Sobic007G139900 Sobic007G139900 Sobic001G359800--Sobic007G139900 Sobic001G243732 Sobic001G243732 Sobic001G359800--Sobic001G243732 Sobic004G323600 Sobic004G323600 Sobic001G359800--Sobic004G323600 Sobic009G182500 Sobic009G182500 Sobic001G359800--Sobic009G182500 Sobic004G268900 Sobic004G268900 Sobic001G359800--Sobic004G268900 Sobic008G047600 Sobic008G047600 Sobic007G182101--Sobic008G047600 Sobic001G284425 Sobic001G284425 Sobic007G182101--Sobic001G284425 Sobic003G385000 Sobic003G385000 Sobic007G182101--Sobic003G385000 Sobic007G182101--Sobic001G359800 Sobic004G098800 Sobic004G098800 Sobic007G182101--Sobic004G098800 Sobic006G128200 Sobic006G128200 Sobic007G182101--Sobic006G128200 Sobic008G058200 Sobic008G058200 Sobic007G182101--Sobic008G058200 Sobic010G134700 Sobic010G134700 Sobic007G182101--Sobic010G134700 Sobic007G182101--Sobic004G268900 Sobic006G094500 Sobic006G094500 Sobic007G224300--Sobic006G094500 Sobic007G224300--Sobic007G139900 Sobic008G051400 Sobic008G051400 Sobic007G224300--Sobic008G051400 Sobic002G138700 Sobic002G138700 Sobic007G224300--Sobic002G138700 Sobic009G187600 Sobic009G187600 Sobic007G224300--Sobic009G187600 Sobic009G171100 Sobic009G171100 Sobic007G224300--Sobic009G171100 Sobic004G018200 Sobic004G018200 Sobic007G224300--Sobic004G018200 Sobic010G178800 Sobic010G178800 Sobic007G224300--Sobic010G178800 Sobic001G525400 Sobic001G525400 Sobic007G224300--Sobic001G525400 Sobic007G216800 Sobic007G216800 Sobic003G055000--Sobic007G216800 Sobic002G158300 Sobic002G158300 Sobic003G055000--Sobic002G158300 Sobic002G212300 Sobic002G212300 Sobic003G055000--Sobic002G212300 Sobic001G453600 Sobic001G453600 Sobic003G055000--Sobic001G453600 Sobic009G138401 Sobic009G138401 Sobic003G055000--Sobic009G138401 Sobic009G160700 Sobic009G160700 Sobic003G055000--Sobic009G160700 Sobic007G048900 Sobic007G048900 Sobic003G055000--Sobic007G048900 Sobic002G102300 Sobic002G102300 Sobic003G055000--Sobic002G102300 Sobic002G015700 Sobic002G015700 Sobic003G055000--Sobic002G015700 Sobic005G208900--Sobic007G139900 Sobic009G014200 Sobic009G014200 Sobic005G208900--Sobic009G014200 Sobic005G208900--Sobic007G224300 Sobic003G131500 Sobic003G131500 Sobic005G208900--Sobic003G131500 Sobic003G304100 Sobic003G304100 Sobic005G208900--Sobic003G304100 Sobic002G160600 Sobic002G160600 Sobic005G208900--Sobic002G160600 Sobic001G287600 Sobic001G287600 Sobic005G208900--Sobic001G287600 Sobic001G462800 Sobic001G462800 Sobic005G208900--Sobic001G462800 Sobic007G124100 Sobic007G124100 Sobic005G208900--Sobic007G124100 Sobic009G010400 Sobic009G010400 Sobic007G139900--Sobic009G010400 Sobic007G139900--Sobic005G208900 Sobic007G139900--Sobic007G224300 Sobic007G139900--Sobic007G124100 Sobic004G006500 Sobic004G006500 Sobic007G139900--Sobic004G006500 Sobic007G139900--Sobic001G287600 Sobic001G118900 Sobic001G118900 Sobic007G139900--Sobic001G118900 Sobic004G065900 Sobic004G065900 Sobic007G139900--Sobic004G065900 Sobic004G086800 Sobic004G086800 Sobic007G139900--Sobic004G086800 Sobic004G011433 Sobic004G011433 Sobic001G243732--Sobic004G011433 Sobic004G185500 Sobic004G185500 Sobic001G243732--Sobic004G185500 Sobic001G243732--Sobic006G094500 Sobic010G194200 Sobic010G194200 Sobic001G243732--Sobic010G194200 Sobic001G243732--Sobic008G058200 Sobic001G243732--Sobic009G187600 Sobic009G218000 Sobic009G218000 Sobic001G243732--Sobic009G218000 Sobic007G157500 Sobic007G157500 Sobic001G243732--Sobic007G157500 Sobic004G043600 Sobic004G043600 Sobic001G243732--Sobic004G043600 Sobic004G278000 Sobic004G278000 Sobic004G323600--Sobic004G278000 Sobic004G323600--Sobic004G086800 Sobic004G323600--Sobic010G178800 Sobic004G259500 Sobic004G259500 Sobic004G323600--Sobic004G259500 Sobic003G253500 Sobic003G253500 Sobic004G323600--Sobic003G253500 Sobic008G129000 Sobic008G129000 Sobic004G323600--Sobic008G129000 Sobic007G201100 Sobic007G201100 Sobic004G323600--Sobic007G201100 Sobic003G416500 Sobic003G416500 Sobic004G323600--Sobic003G416500 Sobic004G323600--Sobic004G268900 Sobic004G338200 Sobic004G338200 Sobic009G182500--Sobic004G338200 Sobic001G020200 Sobic001G020200 Sobic009G182500--Sobic001G020200 Sobic008G040800 Sobic008G040800 Sobic009G182500--Sobic008G040800 Sobic009G161700 Sobic009G161700 Sobic009G182500--Sobic009G161700 Sobic003G314200 Sobic003G314200 Sobic009G182500--Sobic003G314200 Sobic003G077800 Sobic003G077800 Sobic009G182500--Sobic003G077800 Sobic008G191200 Sobic008G191200 Sobic009G182500--Sobic008G191200 Sobic004G176950 Sobic004G176950 Sobic009G182500--Sobic004G176950 Sobic010G132100 Sobic010G132100 Sobic009G182500--Sobic010G132100 Sobic004G268900--Sobic004G323600 Sobic004G268900--Sobic004G065900 Sobic004G187800 Sobic004G187800 Sobic004G268900--Sobic004G187800 Sobic002G207300 Sobic002G207300 Sobic004G268900--Sobic002G207300 Sobic002G294600 Sobic002G294600 Sobic004G268900--Sobic002G294600 Sobic004G268900--Sobic004G086800 Sobic004G268900--Sobic001G287600 Sobic002G185200 Sobic002G185200 Sobic004G268900--Sobic002G185200 Sobic002G080100 Sobic002G080100 Sobic004G268900--Sobic002G080100
Octagon: transcription factors


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