Gene annotation
Transcriptome id Sobic.003G186500.1
Synonym Sb03g025160
Functional annotation N-rich protein, putative, expressed
UniProt C5XN11
Pfam PF10539
Panther DB PTHR10857 PTHR10857:SF45
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G42050 : DCD (Development and Cell Death) domain protein
RAP-DB (Rice) LOC_Os01g36950.2 : N-rich protein, putative, expressed
MaizeGDB (Corn) Zm00025a036816 , Zm00025a028797 , Zm00025a038326
Brachypodium KQK08279
Barley HORVU5Hr1G111870.12 , HORVU5Hr1G111870.11 , HORVU5Hr1G111870.10 , HORVU5Hr1G111870.7 , HORVU5Hr1G111870.6 , HORVU5Hr1G111870.5 , HORVU5Hr1G111870.4 , HORVU5Hr1G111870.3 , HORVU5Hr1G111870.2 , HORVU5Hr1G111870.1 , HORVU5Hr1G111870.9 , HORVU5Hr1G111870.8
Wheat TraesCS5D02G482800 , TraesCS5A02G469800 , TraesCS5B02G482400
Populus -


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cDNA sequences
Sobic.003G186500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G051600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed -
2 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
3 Sobic.001G489600 expressed protein -
4 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
5 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
6 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
7 Sobic.001G476400 - -
8 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
9 Sobic.001G314700 uncharacterized Cys-rich domain containing protein, putative, expressed -
10 Sobic.002G344700 remorin, putative, expressed -
11 Sobic.010G052600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
12 Sobic.004G321000 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
13 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
14 Sobic.002G337800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.010G076700 expressed protein -
16 Sobic.003G158600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
17 Sobic.003G352400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
18 Sobic.003G296700 protein kinase domain containing protein, expressed -
19 Sobic.006G193900 DUF581 domain containing protein, expressed -
20 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin


Gene co-expression network
sample Sobic003G186500 Sobic003G186500 Sobic001G051600 Sobic001G051600 Sobic003G186500--Sobic001G051600 Sobic001G462800 Sobic001G462800 Sobic003G186500--Sobic001G462800 Sobic001G489600 Sobic001G489600 Sobic003G186500--Sobic001G489600 Sobic001G081600 Sobic001G081600 Sobic003G186500--Sobic001G081600 Sobic006G095600 Sobic006G095600 Sobic003G186500--Sobic006G095600 Sobic002G294600 Sobic002G294600 Sobic003G186500--Sobic002G294600 Sobic001G476400 Sobic001G476400 Sobic003G186500--Sobic001G476400 Sobic004G025000 Sobic004G025000 Sobic003G186500--Sobic004G025000 Sobic001G314700 Sobic001G314700 Sobic003G186500--Sobic001G314700 Sobic001G051600--Sobic001G489600 Sobic001G051600--Sobic001G476400 Sobic001G051600--Sobic006G095600 Sobic002G203000 Sobic002G203000 Sobic001G051600--Sobic002G203000 Sobic007G057100 Sobic007G057100 Sobic001G051600--Sobic007G057100 Sobic004G051166 Sobic004G051166 Sobic001G051600--Sobic004G051166 Sobic008G159100 Sobic008G159100 Sobic001G051600--Sobic008G159100 Sobic001G051600--Sobic001G081600 Sobic001G051600--Sobic004G025000 Sobic001G462800--Sobic001G081600 Sobic002G217100 Sobic002G217100 Sobic001G462800--Sobic002G217100 Sobic001G462800--Sobic002G294600 Sobic002G197600 Sobic002G197600 Sobic001G462800--Sobic002G197600 Sobic002G344700 Sobic002G344700 Sobic001G462800--Sobic002G344700 Sobic002G367900 Sobic002G367900 Sobic001G462800--Sobic002G367900 Sobic006G210300 Sobic006G210300 Sobic001G462800--Sobic006G210300 Sobic007G145700 Sobic007G145700 Sobic001G462800--Sobic007G145700 Sobic004G281200 Sobic004G281200 Sobic001G462800--Sobic004G281200 Sobic001G489600--Sobic001G051600 Sobic001G489600--Sobic006G095600 Sobic001G077700 Sobic001G077700 Sobic001G489600--Sobic001G077700 Sobic001G489600--Sobic002G203000 Sobic001G489600--Sobic007G057100 Sobic004G280900 Sobic004G280900 Sobic001G489600--Sobic004G280900 Sobic001G489600--Sobic001G476400 Sobic009G071800 Sobic009G071800 Sobic001G489600--Sobic009G071800 Sobic004G286600 Sobic004G286600 Sobic001G489600--Sobic004G286600 Sobic001G081600--Sobic001G462800 Sobic001G081600--Sobic002G217100 Sobic001G081600--Sobic006G210300 Sobic004G283300 Sobic004G283300 Sobic001G081600--Sobic004G283300 Sobic001G081600--Sobic002G197600 Sobic001G081600--Sobic004G281200 Sobic001G081600--Sobic002G344700 Sobic001G081600--Sobic004G025000 Sobic001G081600--Sobic001G476400 Sobic006G095600--Sobic001G489600 Sobic006G095600--Sobic002G203000 Sobic006G095600--Sobic001G051600 Sobic006G095600--Sobic001G077700 Sobic006G095600--Sobic009G071800 Sobic006G095600--Sobic007G057100 Sobic004G084100 Sobic004G084100 Sobic006G095600--Sobic004G084100 Sobic001G473900 Sobic001G473900 Sobic006G095600--Sobic001G473900 Sobic006G095600--Sobic001G476400 Sobic002G294600--Sobic007G145700 Sobic002G294600--Sobic001G462800 Sobic001G095700 Sobic001G095700 Sobic002G294600--Sobic001G095700 Sobic002G294600--Sobic002G367900 Sobic004G065900 Sobic004G065900 Sobic002G294600--Sobic004G065900 Sobic002G294600--Sobic002G217100 Sobic003G341100 Sobic003G341100 Sobic002G294600--Sobic003G341100 Sobic006G146500 Sobic006G146500 Sobic002G294600--Sobic006G146500 Sobic001G118900 Sobic001G118900 Sobic002G294600--Sobic001G118900 Sobic001G063600 Sobic001G063600 Sobic001G476400--Sobic001G063600 Sobic001G476400--Sobic001G051600 Sobic001G476400--Sobic001G473900 Sobic010G076600 Sobic010G076600 Sobic001G476400--Sobic010G076600 Sobic001G476400--Sobic001G081600 Sobic010G080400 Sobic010G080400 Sobic001G476400--Sobic010G080400 Sobic001G476400--Sobic006G095600 Sobic001G476400--Sobic004G283300 Sobic001G476400--Sobic001G489600 Sobic004G025000--Sobic001G081600 Sobic002G379400 Sobic002G379400 Sobic004G025000--Sobic002G379400 Sobic004G025000--Sobic006G095600 Sobic004G025000--Sobic002G344700 Sobic002G330300 Sobic002G330300 Sobic004G025000--Sobic002G330300 Sobic004G025000--Sobic001G476400 Sobic004G025000--Sobic001G063600 Sobic004G025000--Sobic001G314700 Sobic010G076700 Sobic010G076700 Sobic004G025000--Sobic010G076700 Sobic001G314700--Sobic007G145700 Sobic001G314700--Sobic004G025000 Sobic001G314700--Sobic001G081600 Sobic001G314700--Sobic006G146500 Sobic001G314700--Sobic001G462800 Sobic001G314700--Sobic003G341100 Sobic001G314700--Sobic002G294600 Sobic003G352400 Sobic003G352400 Sobic001G314700--Sobic003G352400 Sobic002G118600 Sobic002G118600 Sobic001G314700--Sobic002G118600
Octagon: transcription factors


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