Gene annotation
| Transcriptome id | Sobic.006G193900.1 |
|---|---|
| Synonym | Sb06g026660 |
| Functional annotation | DUF581 domain containing protein, expressed |
| UniProt | C5YEM3 |
| Pfam | PF04570 |
| Panther DB | PTHR33059 PTHR33059:SF20 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G47060 : Protein of unknown function (DUF581) |
|---|---|
| RAP-DB (Rice) | LOC_Os04g49660.1 : DUF581 domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a010048 |
| Brachypodium | KQJ84256 |
| Barley | HORVU2Hr1G104960.1 , HORVU2Hr1G104960.2 |
| Wheat | TraesCS2A02G454800 , TraesCS2B02G476700 , TraesCS2D02G455000 |
| Populus | - |
JBrowse
| Sobic.006G193900 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G278200 | DUF581 domain containing protein, expressed | - |
| 2 | Sobic.009G208800 | hydrolase, acting on carbon-nitrogen, putative, expressed | - |
| 3 | Sobic.004G257300 | GPI-anchored protein, putative, expressed | - |
| 4 | Sobic.001G489600 | expressed protein | - |
| 5 | Sobic.004G321000 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 6 | Sobic.009G163900 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@DnaK family protein, putative, expressed | K03283: heat shock 70kDa protein 1/2/6/8 |
| 7 | Sobic.007G057100 | expressed protein | - |
| 8 | Sobic.001G051600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed | - |
| 9 | Sobic.009G231400 | Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dnaJ domain containing protein, expressed | K09510: DnaJ homolog subfamily B member 4 |
| 10 | Sobic.002G203000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 11 | Sobic.001G476400 | - | - |
| 12 | Sobic.009G073300 | harpin-induced protein 1 domain containing protein, expressed | - |
| 13 | Sobic.008G159100 | similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed | K02183: calmodulin |
| 14 | Sobic.001G063600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K13412: calcium-dependent protein kinase |
| 15 | Sobic.009G258300 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 16 | Sobic.003G032900 | expressed protein | - |
| 17 | Sobic.003G293600 | -(PubMedID : 34525227)@beta,beta-carotene 9,10-dioxygenase, putative, expressed | K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase |
| 18 | Sobic.010G076700 | expressed protein | - |
| 19 | Sobic.006G194100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed | - |
| 20 | Sobic.009G220200 | exostosin family domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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