Gene annotation
Transcriptome id Sobic.001G380400.1
Synonym Sb01g036090
Functional annotation reticulon domain containing protein, putative, expressed
UniProt C5X0S8
Pfam PF02453
Panther DB PTHR10994 PTHR10994:SF67
NCBI CDD KOG1792; Reticulon
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G10915 : Reticulon family protein
RAP-DB (Rice) LOC_Os03g21840.1 : reticulon domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052418
Brachypodium KQK21793 , KQK21792
Barley -
Wheat TraesCS4D02G171300 , TraesCS4D02G171300 , TraesCS4D02G171300 , TraesCS4A02G135900 , TraesCS4A02G135900 , TraesCS4B02G169100 , TraesCS4B02G169100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G047400 "HGW(Ortholog in rice:Li et al., 2012)"(PubMedID : 31659929)@proline-rich cell wall protein-like, putative, expressed -
2 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
3 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
4 Sobic.002G180600 expressed protein K17968: TRIAP1, TRIAP1/MDM35 family protein
5 Sobic.001G064800 expp1 protein precursor, putative, expressed -
6 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
7 Sobic.007G098400 tyrosine protein kinase domain containing protein, putative, expressed -
8 Sobic.009G127000 leucine-rich repeat family protein, putative, expressed -
9 Sobic.002G296300 expressed protein -
10 Sobic.009G249000 CAMK_CAMK_like.5 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
11 Sobic.002G242500 Expressed in older stem(PubMedID : 28649278)@WRKY90, expressed K18835: WRKY transcription factor 2
12 Sobic.010G204300 expressed protein -
13 Sobic.010G228000 Protein kinase domain containing protein, expressed -
14 Sobic.010G062800 transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
15 Sobic.005G176000 zinc finger family protein, putative, expressed -
16 Sobic.004G284500 ORM1, putative, expressed -
17 Sobic.004G183400 expressed protein -
18 Sobic.004G107600 prefoldin subunit, putative, expressed K04798: pfdB, prefoldin beta subunit
19 Sobic.006G250500 expressed protein -
20 Sobic.009G178100 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126


Gene co-expression network
sample Sobic001G380400 Sobic001G380400 Sobic010G047400 Sobic010G047400 Sobic001G380400--Sobic010G047400 Sobic003G220600 Sobic003G220600 Sobic001G380400--Sobic003G220600 Sobic001G403700 Sobic001G403700 Sobic001G380400--Sobic001G403700 Sobic002G180600 Sobic002G180600 Sobic001G380400--Sobic002G180600 Sobic001G064800 Sobic001G064800 Sobic001G380400--Sobic001G064800 Sobic004G145200 Sobic004G145200 Sobic001G380400--Sobic004G145200 Sobic007G098400 Sobic007G098400 Sobic001G380400--Sobic007G098400 Sobic009G127000 Sobic009G127000 Sobic001G380400--Sobic009G127000 Sobic002G296300 Sobic002G296300 Sobic001G380400--Sobic002G296300 Sobic005G228000 Sobic005G228000 Sobic010G047400--Sobic005G228000 Sobic010G204300 Sobic010G204300 Sobic010G047400--Sobic010G204300 Sobic001G019900 Sobic001G019900 Sobic010G047400--Sobic001G019900 Sobic004G157000 Sobic004G157000 Sobic010G047400--Sobic004G157000 Sobic010G217900 Sobic010G217900 Sobic010G047400--Sobic010G217900 Sobic010G047400--Sobic001G064800 Sobic001G283500 Sobic001G283500 Sobic010G047400--Sobic001G283500 Sobic003G249800 Sobic003G249800 Sobic010G047400--Sobic003G249800 Sobic002G212200 Sobic002G212200 Sobic010G047400--Sobic002G212200 Sobic003G248600 Sobic003G248600 Sobic003G220600--Sobic003G248600 Sobic002G202300 Sobic002G202300 Sobic003G220600--Sobic002G202300 Sobic003G253000 Sobic003G253000 Sobic003G220600--Sobic003G253000 Sobic003G115800 Sobic003G115800 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic004G293700 Sobic004G293700 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G367451 Sobic003G367451 Sobic003G220600--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic003G220600--Sobic009G146100 Sobic009G111600 Sobic009G111600 Sobic001G403700--Sobic009G111600 Sobic004G284500 Sobic004G284500 Sobic001G403700--Sobic004G284500 Sobic002G078400 Sobic002G078400 Sobic001G403700--Sobic002G078400 Sobic006G182100 Sobic006G182100 Sobic001G403700--Sobic006G182100 Sobic001G403700--Sobic002G296300 Sobic001G403700--Sobic003G248600 Sobic008G132800 Sobic008G132800 Sobic001G403700--Sobic008G132800 Sobic002G214900 Sobic002G214900 Sobic001G403700--Sobic002G214900 Sobic010G213400 Sobic010G213400 Sobic001G403700--Sobic010G213400 Sobic002G264400 Sobic002G264400 Sobic002G180600--Sobic002G264400 Sobic006G264300 Sobic006G264300 Sobic002G180600--Sobic006G264300 Sobic002G282400 Sobic002G282400 Sobic002G180600--Sobic002G282400 Sobic010G253800 Sobic010G253800 Sobic002G180600--Sobic010G253800 Sobic006G141500 Sobic006G141500 Sobic002G180600--Sobic006G141500 Sobic002G249000 Sobic002G249000 Sobic002G180600--Sobic002G249000 Sobic003G333400 Sobic003G333400 Sobic002G180600--Sobic003G333400 Sobic001G329100 Sobic001G329100 Sobic002G180600--Sobic001G329100 Sobic010G071900 Sobic010G071900 Sobic002G180600--Sobic010G071900 Sobic001G064800--Sobic006G182100 Sobic002G261800 Sobic002G261800 Sobic001G064800--Sobic002G261800 Sobic001G067601 Sobic001G067601 Sobic001G064800--Sobic001G067601 Sobic010G153100 Sobic010G153100 Sobic001G064800--Sobic010G153100 Sobic001G064800--Sobic001G019900 Sobic001G445800 Sobic001G445800 Sobic001G064800--Sobic001G445800 Sobic001G064800--Sobic010G204300 Sobic004G157800 Sobic004G157800 Sobic001G064800--Sobic004G157800 Sobic001G206400 Sobic001G206400 Sobic001G064800--Sobic001G206400 Sobic010G228000 Sobic010G228000 Sobic004G145200--Sobic010G228000 Sobic008G016900 Sobic008G016900 Sobic004G145200--Sobic008G016900 Sobic007G188100 Sobic007G188100 Sobic004G145200--Sobic007G188100 Sobic006G076201 Sobic006G076201 Sobic004G145200--Sobic006G076201 Sobic010G062800 Sobic010G062800 Sobic004G145200--Sobic010G062800 Sobic002G362900 Sobic002G362900 Sobic004G145200--Sobic002G362900 Sobic001G012800 Sobic001G012800 Sobic004G145200--Sobic001G012800 Sobic002G242500 Sobic002G242500 Sobic004G145200--Sobic002G242500 Sobic002G118600 Sobic002G118600 Sobic004G145200--Sobic002G118600 Sobic007G098400--Sobic002G242500 Sobic005G211400 Sobic005G211400 Sobic007G098400--Sobic005G211400 Sobic009G241700 Sobic009G241700 Sobic007G098400--Sobic009G241700 Sobic001G010400 Sobic001G010400 Sobic007G098400--Sobic001G010400 Sobic001G049200 Sobic001G049200 Sobic007G098400--Sobic001G049200 Sobic007G098400--Sobic001G380400 Sobic001G090000 Sobic001G090000 Sobic007G098400--Sobic001G090000 Sobic003G273700 Sobic003G273700 Sobic007G098400--Sobic003G273700 Sobic002G294200 Sobic002G294200 Sobic007G098400--Sobic002G294200 Sobic001G074200 Sobic001G074200 Sobic009G127000--Sobic001G074200 Sobic009G127000--Sobic004G145200 Sobic009G127000--Sobic010G228000 Sobic009G127000--Sobic007G188100 Sobic009G127000--Sobic010G062800 Sobic009G127000--Sobic001G403700 Sobic009G127000--Sobic001G283500 Sobic007G125900 Sobic007G125900 Sobic009G127000--Sobic007G125900 Sobic002G083266 Sobic002G083266 Sobic009G127000--Sobic002G083266 Sobic005G176000 Sobic005G176000 Sobic002G296300--Sobic005G176000 Sobic008G097401 Sobic008G097401 Sobic002G296300--Sobic008G097401 Sobic002G296300--Sobic010G204300 Sobic007G186300 Sobic007G186300 Sobic002G296300--Sobic007G186300 Sobic002G296300--Sobic003G220600 Sobic002G296300--Sobic003G115800 Sobic003G332401 Sobic003G332401 Sobic002G296300--Sobic003G332401 Sobic002G296300--Sobic001G403700 Sobic003G007500 Sobic003G007500 Sobic002G296300--Sobic003G007500
Octagon: transcription factors


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