Gene annotation
Transcriptome id Sobic.009G178100.2,Sobic.009G178100.1
Synonym Sb09g023840, ATCRT1
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YZW8 , A0A1B6P982
Pfam PF13639 PF14369 PF14369 PF13639
Panther DB PTHR22763:SF28 PTHR22763 PTHR22763 PTHR22763:SF28
NCBI CDD -
KEGG Orthology K11982; E3 ubiquitin-protein ligase RNF115/126
Gene Ontology GO:0005515; protein binding GO:0008270zinc ion binding GO:0008270zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G56340 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g40980.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044054
Brachypodium KQK05684
Barley HORVU1Hr1G068950.3 , HORVU1Hr1G068950.2 , HORVU1Hr1G068950.1
Wheat -
Populus -


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cDNA sequences
Sobic.009G178100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G121300 nitrate-induced NOI protein, putative, expressed -
2 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
3 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
4 Sobic.001G445800 expressed protein -
5 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
6 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
7 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
8 Sobic.004G107600 prefoldin subunit, putative, expressed K04798: pfdB, prefoldin beta subunit
9 Sobic.004G157000 protein kinase domain containing protein, expressed K13430: serine/threonine-protein kinase PBS1
10 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
11 Sobic.002G282400 expressed protein -
12 Sobic.002G155500 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
13 Sobic.001G048832 - -
14 Sobic.006G141500 expressed protein -
15 Sobic.004G225500 bolA, putative, expressed K05527: BolA family transcriptional regulator, general stress-responsive regulator
16 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
17 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
18 Sobic.010G237000 coiled-coil domain-containing protein 72, putative, expressed -
19 Sobic.006G182100 ORM1, putative, expressed -
20 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B


Gene co-expression network
sample Sobic009G178100 Sobic009G178100 Sobic010G121300 Sobic010G121300 Sobic009G178100--Sobic010G121300 Sobic001G005900 Sobic001G005900 Sobic009G178100--Sobic001G005900 Sobic002G078400 Sobic002G078400 Sobic009G178100--Sobic002G078400 Sobic001G445800 Sobic001G445800 Sobic009G178100--Sobic001G445800 Sobic003G249800 Sobic003G249800 Sobic009G178100--Sobic003G249800 Sobic003G220600 Sobic003G220600 Sobic009G178100--Sobic003G220600 Sobic003G253000 Sobic003G253000 Sobic009G178100--Sobic003G253000 Sobic004G107600 Sobic004G107600 Sobic009G178100--Sobic004G107600 Sobic004G157000 Sobic004G157000 Sobic009G178100--Sobic004G157000 Sobic010G121300--Sobic009G178100 Sobic002G155500 Sobic002G155500 Sobic010G121300--Sobic002G155500 Sobic004G225500 Sobic004G225500 Sobic010G121300--Sobic004G225500 Sobic006G141500 Sobic006G141500 Sobic010G121300--Sobic006G141500 Sobic010G121300--Sobic003G253000 Sobic009G185800 Sobic009G185800 Sobic010G121300--Sobic009G185800 Sobic001G415500 Sobic001G415500 Sobic010G121300--Sobic001G415500 Sobic004G300900 Sobic004G300900 Sobic010G121300--Sobic004G300900 Sobic009G146100 Sobic009G146100 Sobic010G121300--Sobic009G146100 Sobic009G198500 Sobic009G198500 Sobic001G005900--Sobic009G198500 Sobic004G327300 Sobic004G327300 Sobic001G005900--Sobic004G327300 Sobic001G005900--Sobic004G300900 Sobic001G048832 Sobic001G048832 Sobic001G005900--Sobic001G048832 Sobic001G005900--Sobic002G078400 Sobic001G502200 Sobic001G502200 Sobic001G005900--Sobic001G502200 Sobic004G130900 Sobic004G130900 Sobic001G005900--Sobic004G130900 Sobic007G096700 Sobic007G096700 Sobic001G005900--Sobic007G096700 Sobic001G501200 Sobic001G501200 Sobic001G005900--Sobic001G501200 Sobic002G078400--Sobic004G300900 Sobic010G065400 Sobic010G065400 Sobic002G078400--Sobic010G065400 Sobic003G362400 Sobic003G362400 Sobic002G078400--Sobic003G362400 Sobic007G091000 Sobic007G091000 Sobic002G078400--Sobic007G091000 Sobic008G132800 Sobic008G132800 Sobic002G078400--Sobic008G132800 Sobic002G078400--Sobic001G445800 Sobic001G331900 Sobic001G331900 Sobic002G078400--Sobic001G331900 Sobic002G078400--Sobic009G198500 Sobic010G029400 Sobic010G029400 Sobic002G078400--Sobic010G029400 Sobic008G129400 Sobic008G129400 Sobic001G445800--Sobic008G129400 Sobic003G321700 Sobic003G321700 Sobic001G445800--Sobic003G321700 Sobic001G445800--Sobic002G078400 Sobic001G445800--Sobic003G249800 Sobic002G046100 Sobic002G046100 Sobic001G445800--Sobic002G046100 Sobic010G018400 Sobic010G018400 Sobic001G445800--Sobic010G018400 Sobic010G154700 Sobic010G154700 Sobic001G445800--Sobic010G154700 Sobic001G019900 Sobic001G019900 Sobic001G445800--Sobic001G019900 Sobic002G190900 Sobic002G190900 Sobic001G445800--Sobic002G190900 Sobic008G161000 Sobic008G161000 Sobic003G249800--Sobic008G161000 Sobic001G037000 Sobic001G037000 Sobic003G249800--Sobic001G037000 Sobic009G033700 Sobic009G033700 Sobic003G249800--Sobic009G033700 Sobic003G249800--Sobic002G046100 Sobic002G282400 Sobic002G282400 Sobic003G249800--Sobic002G282400 Sobic002G330000 Sobic002G330000 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic002G211900 Sobic002G211900 Sobic003G249800--Sobic002G211900 Sobic003G181500 Sobic003G181500 Sobic003G249800--Sobic003G181500 Sobic003G248600 Sobic003G248600 Sobic003G220600--Sobic003G248600 Sobic002G202300 Sobic002G202300 Sobic003G220600--Sobic002G202300 Sobic003G220600--Sobic003G253000 Sobic003G115800 Sobic003G115800 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic004G293700 Sobic004G293700 Sobic003G220600--Sobic004G293700 Sobic003G220600--Sobic004G300900 Sobic003G367451 Sobic003G367451 Sobic003G220600--Sobic003G367451 Sobic003G220600--Sobic009G146100 Sobic003G253000--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic003G253000--Sobic002G046100 Sobic003G253000--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic003G253000--Sobic006G108400 Sobic004G107600--Sobic001G331900 Sobic004G107600--Sobic003G362400 Sobic001G377800 Sobic001G377800 Sobic004G107600--Sobic001G377800 Sobic010G182600 Sobic010G182600 Sobic004G107600--Sobic010G182600 Sobic005G092800 Sobic005G092800 Sobic004G107600--Sobic005G092800 Sobic005G157200 Sobic005G157200 Sobic004G107600--Sobic005G157200 Sobic004G107600--Sobic002G078400 Sobic004G107600--Sobic003G321700 Sobic004G107600--Sobic001G445800 Sobic010G204600 Sobic010G204600 Sobic004G157000--Sobic010G204600 Sobic009G046600 Sobic009G046600 Sobic004G157000--Sobic009G046600 Sobic004G157000--Sobic003G249800 Sobic004G157000--Sobic002G046100 Sobic009G129000 Sobic009G129000 Sobic004G157000--Sobic009G129000 Sobic009G023200 Sobic009G023200 Sobic004G157000--Sobic009G023200 Sobic004G157000--Sobic009G033700 Sobic004G157000--Sobic002G345300 Sobic003G285800 Sobic003G285800 Sobic004G157000--Sobic003G285800
Octagon: transcription factors


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