Gene annotation
Transcriptome id Sobic.001G380900.1
Synonym Sb01g036150
Functional annotation pentatricopeptide repeat domain containing protein, putative, expressed
UniProt C5X0T4
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09900 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os03g21780.1 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002351
Brachypodium KQK21800
Barley HORVU4Hr1G050230.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G256700 expressed protein -
2 Sobic.004G035750 - -
3 Sobic.004G327700 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
4 Sobic.009G249600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcriptional regulator, putative, expressed K07735: putative transcriptional regulator
5 Sobic.009G242100 chloroplast unusual positioning protein, putative, expressed -
6 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
7 Sobic.009G104800 AMP deaminase, putative, expressed K01490: AMP deaminase
8 Sobic.002G062000 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
9 Sobic.005G101300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
10 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
11 Sobic.009G125400 FZL, putative, expressed -
12 Sobic.008G149000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
13 Sobic.003G318300 pentatricopeptide repeat domain containing protein, putative, expressed -
14 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
15 Sobic.001G340600 expressed protein -
16 Sobic.003G303700 Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein -
17 Sobic.006G077400 PAP fibrillin family domain containing protein, expressed -
18 Sobic.010G039500 genetic modifier, putative, expressed -
19 Sobic.001G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed -
20 Sobic.001G314200 expressed protein -


Gene co-expression network
sample Sobic001G380900 Sobic001G380900 Sobic003G256700 Sobic003G256700 Sobic001G380900--Sobic003G256700 Sobic004G035750 Sobic004G035750 Sobic001G380900--Sobic004G035750 Sobic004G327700 Sobic004G327700 Sobic001G380900--Sobic004G327700 Sobic009G249600 Sobic009G249600 Sobic001G380900--Sobic009G249600 Sobic009G242100 Sobic009G242100 Sobic001G380900--Sobic009G242100 Sobic007G140800 Sobic007G140800 Sobic001G380900--Sobic007G140800 Sobic009G104800 Sobic009G104800 Sobic001G380900--Sobic009G104800 Sobic002G062000 Sobic002G062000 Sobic001G380900--Sobic002G062000 Sobic005G101300 Sobic005G101300 Sobic001G380900--Sobic005G101300 Sobic003G431900 Sobic003G431900 Sobic003G256700--Sobic003G431900 Sobic006G244000 Sobic006G244000 Sobic003G256700--Sobic006G244000 Sobic002G324500 Sobic002G324500 Sobic003G256700--Sobic002G324500 Sobic004G125700 Sobic004G125700 Sobic003G256700--Sobic004G125700 Sobic003G256700--Sobic009G104800 Sobic008G053200 Sobic008G053200 Sobic003G256700--Sobic008G053200 Sobic002G036000 Sobic002G036000 Sobic003G256700--Sobic002G036000 Sobic001G329400 Sobic001G329400 Sobic003G256700--Sobic001G329400 Sobic003G234200 Sobic003G234200 Sobic003G256700--Sobic003G234200 Sobic004G035750--Sobic003G256700 Sobic008G104601 Sobic008G104601 Sobic004G035750--Sobic008G104601 Sobic007G189700 Sobic007G189700 Sobic004G035750--Sobic007G189700 Sobic006G051300 Sobic006G051300 Sobic004G035750--Sobic006G051300 Sobic001G520800 Sobic001G520800 Sobic004G035750--Sobic001G520800 Sobic004G035601 Sobic004G035601 Sobic004G035750--Sobic004G035601 Sobic004G035750--Sobic006G244000 Sobic004G035750--Sobic003G431900 Sobic001G406000 Sobic001G406000 Sobic004G035750--Sobic001G406000 Sobic004G327700--Sobic007G140800 Sobic009G125400 Sobic009G125400 Sobic004G327700--Sobic009G125400 Sobic004G274100 Sobic004G274100 Sobic004G327700--Sobic004G274100 Sobic001G069000 Sobic001G069000 Sobic004G327700--Sobic001G069000 Sobic006G010900 Sobic006G010900 Sobic004G327700--Sobic006G010900 Sobic007G009200 Sobic007G009200 Sobic004G327700--Sobic007G009200 Sobic006G016900 Sobic006G016900 Sobic004G327700--Sobic006G016900 Sobic001G484400 Sobic001G484400 Sobic004G327700--Sobic001G484400 Sobic002G172700 Sobic002G172700 Sobic004G327700--Sobic002G172700 Sobic002G273300 Sobic002G273300 Sobic009G249600--Sobic002G273300 Sobic004G351700 Sobic004G351700 Sobic009G249600--Sobic004G351700 Sobic009G249600--Sobic006G244000 Sobic004G343500 Sobic004G343500 Sobic009G249600--Sobic004G343500 Sobic003G009700 Sobic003G009700 Sobic009G249600--Sobic003G009700 Sobic001G239500 Sobic001G239500 Sobic009G249600--Sobic001G239500 Sobic001G134100 Sobic001G134100 Sobic009G249600--Sobic001G134100 Sobic003G004200 Sobic003G004200 Sobic009G249600--Sobic003G004200 Sobic009G054900 Sobic009G054900 Sobic009G249600--Sobic009G054900 Sobic008G117000 Sobic008G117000 Sobic009G242100--Sobic008G117000 Sobic003G036200 Sobic003G036200 Sobic009G242100--Sobic003G036200 Sobic003G342100 Sobic003G342100 Sobic009G242100--Sobic003G342100 Sobic001G073900 Sobic001G073900 Sobic009G242100--Sobic001G073900 Sobic002G049600 Sobic002G049600 Sobic009G242100--Sobic002G049600 Sobic007G105500 Sobic007G105500 Sobic009G242100--Sobic007G105500 Sobic003G332700 Sobic003G332700 Sobic009G242100--Sobic003G332700 Sobic009G242100--Sobic001G134100 Sobic010G255300 Sobic010G255300 Sobic009G242100--Sobic010G255300 Sobic006G077400 Sobic006G077400 Sobic007G140800--Sobic006G077400 Sobic003G303700 Sobic003G303700 Sobic007G140800--Sobic003G303700 Sobic010G201700 Sobic010G201700 Sobic007G140800--Sobic010G201700 Sobic003G024300 Sobic003G024300 Sobic007G140800--Sobic003G024300 Sobic010G153900 Sobic010G153900 Sobic007G140800--Sobic010G153900 Sobic007G140800--Sobic001G329400 Sobic007G140800--Sobic007G009200 Sobic007G140800--Sobic004G125700 Sobic009G237100 Sobic009G237100 Sobic007G140800--Sobic009G237100 Sobic009G104800--Sobic004G125700 Sobic009G104800--Sobic003G024300 Sobic009G104800--Sobic001G329400 Sobic009G104800--Sobic006G077400 Sobic009G104800--Sobic006G244000 Sobic009G104800--Sobic007G140800 Sobic009G104800--Sobic003G256700 Sobic007G161500 Sobic007G161500 Sobic009G104800--Sobic007G161500 Sobic010G095000 Sobic010G095000 Sobic009G104800--Sobic010G095000 Sobic001G267400 Sobic001G267400 Sobic002G062000--Sobic001G267400 Sobic003G326400 Sobic003G326400 Sobic002G062000--Sobic003G326400 Sobic003G378050 Sobic003G378050 Sobic002G062000--Sobic003G378050 Sobic007G006350 Sobic007G006350 Sobic002G062000--Sobic007G006350 Sobic002G235400 Sobic002G235400 Sobic002G062000--Sobic002G235400 Sobic007G050100 Sobic007G050100 Sobic002G062000--Sobic007G050100 Sobic008G030200 Sobic008G030200 Sobic002G062000--Sobic008G030200 Sobic002G062000--Sobic001G380900 Sobic003G147900 Sobic003G147900 Sobic002G062000--Sobic003G147900 Sobic010G039500 Sobic010G039500 Sobic005G101300--Sobic010G039500 Sobic003G367500 Sobic003G367500 Sobic005G101300--Sobic003G367500 Sobic005G101300--Sobic003G024300 Sobic005G101300--Sobic007G009200 Sobic003G398800 Sobic003G398800 Sobic005G101300--Sobic003G398800 Sobic005G101300--Sobic001G329400 Sobic004G356400 Sobic004G356400 Sobic005G101300--Sobic004G356400 Sobic005G101300--Sobic001G134100 Sobic005G101300--Sobic007G105500
Octagon: transcription factors


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