Gene annotation
Transcriptome id Sobic.001G383000.1
Synonym RPL10, SAC52, Sb01g036330, RPL10A
Functional annotation expressed high in San Chi San (an efficient nitrogen user) (PubMedID : 28697783)
Ribosomal protein L16p/L10e family( (PubMedID : 26759170,(PubMedID : 24597475)
ribosomal protein, putative, expressed
UniProt A0A1B6QNF2
Pfam PF00252
Panther DB PTHR11726 PTHR11726:SF13
NCBI CDD KOG0857; 60s ribosomal protein L10
KEGG Orthology K02866; RP-L10e, large subunit ribosomal protein L10e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G14320 : Ribosomal protein L16p/L10e family protein
RAP-DB (Rice) LOC_Os11g11390.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK21836 , KQJ88920
Barley -
Wheat TraesCS4D02G173700 , TraesCS4B02G171600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G117100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cyclin-dependent kinase G-1, putative, expressed K08818: cell division cycle 2-like
2 Sobic.006G267000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
3 Sobic.006G107200 molybdopterin biosynthesis protein CNX3, putative, expressed K03639: moaA, GTP 3',8-cyclase
4 Sobic.007G155200 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
5 Sobic.002G104900 B12D protein, putative, expressed -
6 Sobic.001G231600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
7 Sobic.003G301000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@SGS domain containing protein, expressed K04507: CACYBP, calcyclin binding protein
8 Sobic.002G219200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@plant viral response family protein, putative, expressed -
9 Sobic.003G387200 - -
10 Sobic.002G211900 zinc finger, C3HC4 type domain containing protein, expressed K16274: E3 ubiquitin-protein ligase AIP2
11 Sobic.007G025700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@amino acid transporter, putative, expressed -
12 Sobic.003G429300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NADPH quinone oxidoreductase, putative, expressed -
13 Sobic.004G042600 protein kinase domain containing protein, expressed -
14 Sobic.006G148000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.004G037000 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
16 Sobic.001G015100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
17 Sobic.004G307000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1645 domain containing protein, putative, expressed -
18 Sobic.001G474200 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
19 Sobic.010G204100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 71D7, putative, expressed -
20 Sobic.003G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alanyl-tRNA synthetase, putative, expressed -


Gene co-expression network
sample Sobic001G383000 Sobic001G383000 Sobic002G117100 Sobic002G117100 Sobic001G383000--Sobic002G117100 Sobic006G267000 Sobic006G267000 Sobic001G383000--Sobic006G267000 Sobic006G107200 Sobic006G107200 Sobic001G383000--Sobic006G107200 Sobic007G155200 Sobic007G155200 Sobic001G383000--Sobic007G155200 Sobic002G104900 Sobic002G104900 Sobic001G383000--Sobic002G104900 Sobic001G231600 Sobic001G231600 Sobic001G383000--Sobic001G231600 Sobic003G301000 Sobic003G301000 Sobic001G383000--Sobic003G301000 Sobic002G219200 Sobic002G219200 Sobic001G383000--Sobic002G219200 Sobic003G387200 Sobic003G387200 Sobic001G383000--Sobic003G387200 Sobic007G061300 Sobic007G061300 Sobic002G117100--Sobic007G061300 Sobic003G322900 Sobic003G322900 Sobic002G117100--Sobic003G322900 Sobic002G263400 Sobic002G263400 Sobic002G117100--Sobic002G263400 Sobic002G117100--Sobic002G104900 Sobic001G119100 Sobic001G119100 Sobic002G117100--Sobic001G119100 Sobic003G430400 Sobic003G430400 Sobic002G117100--Sobic003G430400 Sobic004G088551 Sobic004G088551 Sobic002G117100--Sobic004G088551 Sobic001G317000 Sobic001G317000 Sobic002G117100--Sobic001G317000 Sobic002G195400 Sobic002G195400 Sobic002G117100--Sobic002G195400 Sobic006G267000--Sobic003G387200 Sobic001G441100 Sobic001G441100 Sobic006G267000--Sobic001G441100 Sobic001G035000 Sobic001G035000 Sobic006G267000--Sobic001G035000 Sobic006G148000 Sobic006G148000 Sobic006G267000--Sobic006G148000 Sobic004G283500 Sobic004G283500 Sobic006G267000--Sobic004G283500 Sobic002G278500 Sobic002G278500 Sobic006G267000--Sobic002G278500 Sobic001G495132 Sobic001G495132 Sobic006G267000--Sobic001G495132 Sobic001G341600 Sobic001G341600 Sobic006G267000--Sobic001G341600 Sobic009G217600 Sobic009G217600 Sobic006G267000--Sobic009G217600 Sobic010G117900 Sobic010G117900 Sobic006G107200--Sobic010G117900 Sobic009G068200 Sobic009G068200 Sobic006G107200--Sobic009G068200 Sobic004G221500 Sobic004G221500 Sobic006G107200--Sobic004G221500 Sobic006G107200--Sobic001G231600 Sobic006G173900 Sobic006G173900 Sobic006G107200--Sobic006G173900 Sobic002G183100 Sobic002G183100 Sobic006G107200--Sobic002G183100 Sobic006G084600 Sobic006G084600 Sobic006G107200--Sobic006G084600 Sobic010G084700 Sobic010G084700 Sobic006G107200--Sobic010G084700 Sobic001G348700 Sobic001G348700 Sobic006G107200--Sobic001G348700 Sobic009G224100 Sobic009G224100 Sobic007G155200--Sobic009G224100 Sobic002G184200 Sobic002G184200 Sobic007G155200--Sobic002G184200 Sobic005G045900 Sobic005G045900 Sobic007G155200--Sobic005G045900 Sobic002G140400 Sobic002G140400 Sobic007G155200--Sobic002G140400 Sobic004G037000 Sobic004G037000 Sobic007G155200--Sobic004G037000 Sobic010G196600 Sobic010G196600 Sobic007G155200--Sobic010G196600 Sobic004G228500 Sobic004G228500 Sobic007G155200--Sobic004G228500 Sobic003G349600 Sobic003G349600 Sobic007G155200--Sobic003G349600 Sobic002G139400 Sobic002G139400 Sobic007G155200--Sobic002G139400 Sobic002G104900--Sobic001G317000 Sobic007G145600 Sobic007G145600 Sobic002G104900--Sobic007G145600 Sobic010G178500 Sobic010G178500 Sobic002G104900--Sobic010G178500 Sobic001G015100 Sobic001G015100 Sobic002G104900--Sobic001G015100 Sobic009G141800 Sobic009G141800 Sobic002G104900--Sobic009G141800 Sobic002G104900--Sobic002G140400 Sobic002G104900--Sobic004G088551 Sobic003G094200 Sobic003G094200 Sobic002G104900--Sobic003G094200 Sobic002G104900--Sobic002G263400 Sobic007G135201 Sobic007G135201 Sobic001G231600--Sobic007G135201 Sobic007G067600 Sobic007G067600 Sobic001G231600--Sobic007G067600 Sobic001G495164 Sobic001G495164 Sobic001G231600--Sobic001G495164 Sobic001G231600--Sobic006G084600 Sobic007G067350 Sobic007G067350 Sobic001G231600--Sobic007G067350 Sobic010G102300 Sobic010G102300 Sobic001G231600--Sobic010G102300 Sobic001G231600--Sobic002G195400 Sobic004G128400 Sobic004G128400 Sobic001G231600--Sobic004G128400 Sobic001G231600--Sobic004G221500 Sobic003G301000--Sobic002G104900 Sobic003G387000 Sobic003G387000 Sobic003G301000--Sobic003G387000 Sobic001G097600 Sobic001G097600 Sobic003G301000--Sobic001G097600 Sobic003G301000--Sobic006G148000 Sobic006G231332 Sobic006G231332 Sobic003G301000--Sobic006G231332 Sobic009G183300 Sobic009G183300 Sobic003G301000--Sobic009G183300 Sobic003G301000--Sobic007G155200 Sobic009G217000 Sobic009G217000 Sobic003G301000--Sobic009G217000 Sobic010G065900 Sobic010G065900 Sobic003G301000--Sobic010G065900 Sobic009G057400 Sobic009G057400 Sobic002G219200--Sobic009G057400 Sobic003G363200 Sobic003G363200 Sobic002G219200--Sobic003G363200 Sobic010G200700 Sobic010G200700 Sobic002G219200--Sobic010G200700 Sobic002G219200--Sobic001G035000 Sobic004G042600 Sobic004G042600 Sobic002G219200--Sobic004G042600 Sobic002G219200--Sobic006G267000 Sobic006G274300 Sobic006G274300 Sobic002G219200--Sobic006G274300 Sobic003G082000 Sobic003G082000 Sobic002G219200--Sobic003G082000 Sobic010G245800 Sobic010G245800 Sobic002G219200--Sobic010G245800 Sobic003G387200--Sobic006G267000 Sobic003G323700 Sobic003G323700 Sobic003G387200--Sobic003G323700 Sobic003G387200--Sobic001G441100 Sobic003G387200--Sobic001G341600 Sobic003G387200--Sobic001G035000 Sobic003G387200--Sobic006G148000 Sobic002G140300 Sobic002G140300 Sobic003G387200--Sobic002G140300 Sobic003G387200--Sobic003G430400 Sobic007G057700 Sobic007G057700 Sobic003G387200--Sobic007G057700
Octagon: transcription factors


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