Gene annotation
| Transcriptome id | Sobic.001G438800.1 |
|---|---|
| Synonym | Sb01g041260, ARO2 |
| Functional annotation | armadillo/beta-catenin repeat family protein, putative, expressed |
| UniProt | C5WR00 |
| Pfam | PF00514 |
| Panther DB | PTHR23315 PTHR23315:SF128 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0005515; protein binding |
Orthologs (automatic annotation)
| TAIR | AT5G66200 : armadillo repeat only 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g14090.1 : armadillo/beta-catenin repeat family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a031635 , Zm00025a052899 |
| Brachypodium | KQJ96109 , KQJ96110 , KQK22609 |
| Barley | HORVU4Hr1G063640.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.001G438800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G009900 | phytosulfokine receptor precursor, putative, expressed | - |
| 2 | Sobic.001G450800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed | K16055: trehalose 6-phosphate synthase/phosphatase |
| 3 | Sobic.001G430700 | expressed protein | - |
| 4 | Sobic.003G361300 | "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed | K13946: AUX1, auxin influx carrier (AUX1 LAX family) |
| 5 | Sobic.003G198150 | - | - |
| 6 | Sobic.009G037800 | phosphoglycerate mutase, putative, expressed | - |
| 7 | Sobic.009G195800 | Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit |
| 8 | Sobic.004G245900 | - | - |
| 9 | Sobic.003G198200 | "similar to Protein phosphatase 2C, expressed in 4 stresses, namely drought, salt, cold and heat"(PubMedID : 29862293)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed | K14497: protein phosphatase 2C |
| 10 | Sobic.009G156600 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed | K13946: AUX1, auxin influx carrier (AUX1 LAX family) |
| 11 | Sobic.007G178200 | ER lumen protein retaining receptor, putative, expressed | - |
| 12 | Sobic.004G262600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein | - |
| 13 | Sobic.010G260300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 14 | Sobic.001G503400 | expressed protein | - |
| 15 | Sobic.004G319300 | lipase class 3 family protein, putative, expressed | - |
| 16 | Sobic.002G270800 | amino acid transporter, putative, expressed | - |
| 17 | Sobic.004G155150 | - | - |
| 18 | Sobic.004G257350 | - | - |
| 19 | Sobic.009G000700 | Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed | - |
| 20 | Sobic.003G017200 | osFTL1 FT-Like1 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed | K16223: protein FLOWERING LOCUS T |
Gene co-expression network
Octagon: transcription factors
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