Gene annotation
Transcriptome id Sobic.001G463100.1
Synonym Sb01g043460
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WTR0
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF182
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G49850 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g10890.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053130 , Zm00025a001113
Brachypodium KQK23016
Barley -
Wheat TraesCS4D02G255100 , TraesCS4B02G255400
Populus -


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cDNA sequences
Sobic.001G463100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G337000 inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
2 Sobic.006G160600 histidine triad family protein, putative, expressed -
3 Sobic.010G135000 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
4 Sobic.001G054200 green ripe-like, putative, expressed -
5 Sobic.004G083300 OsFBL7 - F-box domain and LRR containing protein, expressed K14515: EIN3-binding F-box protein
6 Sobic.010G199100 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.001G138300 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
8 Sobic.004G265700 anaphase-promoting complex subunit 11, putative, expressed K03868: RBX1, RING-box protein 1
9 Sobic.009G131100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
10 Sobic.003G337000 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
11 Sobic.009G222800 expressed protein -
12 Sobic.001G441600 potyvirus VPg interacting protein, putative, expressed -
13 Sobic.009G174900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
14 Sobic.003G331600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBX168 - F-box domain containing protein, expressed -
15 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
16 Sobic.004G079100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
17 Sobic.001G364600 transmembrane protein 85, putative, expressed -
18 Sobic.003G000800 RWP-RK domain-containing protein, putative, expressed -
19 Sobic.004G001400 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
20 Sobic.007G079700 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic001G463100 Sobic001G463100 Sobic004G337000 Sobic004G337000 Sobic001G463100--Sobic004G337000 Sobic006G160600 Sobic006G160600 Sobic001G463100--Sobic006G160600 Sobic010G135000 Sobic010G135000 Sobic001G463100--Sobic010G135000 Sobic001G054200 Sobic001G054200 Sobic001G463100--Sobic001G054200 Sobic004G083300 Sobic004G083300 Sobic001G463100--Sobic004G083300 Sobic010G199100 Sobic010G199100 Sobic001G463100--Sobic010G199100 Sobic001G138300 Sobic001G138300 Sobic001G463100--Sobic001G138300 Sobic004G265700 Sobic004G265700 Sobic001G463100--Sobic004G265700 Sobic009G131100 Sobic009G131100 Sobic001G463100--Sobic009G131100 Sobic004G337000--Sobic001G463100 Sobic006G263900 Sobic006G263900 Sobic004G337000--Sobic006G263900 Sobic004G337000--Sobic001G138300 Sobic004G337000--Sobic001G054200 Sobic004G293700 Sobic004G293700 Sobic004G337000--Sobic004G293700 Sobic008G001800 Sobic008G001800 Sobic004G337000--Sobic008G001800 Sobic003G000800 Sobic003G000800 Sobic004G337000--Sobic003G000800 Sobic003G050600 Sobic003G050600 Sobic004G337000--Sobic003G050600 Sobic004G337000--Sobic006G160600 Sobic007G026100 Sobic007G026100 Sobic006G160600--Sobic007G026100 Sobic003G273100 Sobic003G273100 Sobic006G160600--Sobic003G273100 Sobic001G427800 Sobic001G427800 Sobic006G160600--Sobic001G427800 Sobic006G160600--Sobic004G293700 Sobic006G160600--Sobic001G054200 Sobic003G116700 Sobic003G116700 Sobic006G160600--Sobic003G116700 Sobic001G441600 Sobic001G441600 Sobic006G160600--Sobic001G441600 Sobic009G249000 Sobic009G249000 Sobic006G160600--Sobic009G249000 Sobic006G160600--Sobic001G463100 Sobic003G130800 Sobic003G130800 Sobic010G135000--Sobic003G130800 Sobic006G180200 Sobic006G180200 Sobic010G135000--Sobic006G180200 Sobic002G345300 Sobic002G345300 Sobic010G135000--Sobic002G345300 Sobic003G181500 Sobic003G181500 Sobic010G135000--Sobic003G181500 Sobic001G459200 Sobic001G459200 Sobic010G135000--Sobic001G459200 Sobic009G023200 Sobic009G023200 Sobic010G135000--Sobic009G023200 Sobic003G350300 Sobic003G350300 Sobic010G135000--Sobic003G350300 Sobic004G330700 Sobic004G330700 Sobic010G135000--Sobic004G330700 Sobic009G185800 Sobic009G185800 Sobic010G135000--Sobic009G185800 Sobic010G083700 Sobic010G083700 Sobic001G054200--Sobic010G083700 Sobic001G054200--Sobic006G263900 Sobic006G212100 Sobic006G212100 Sobic001G054200--Sobic006G212100 Sobic007G186300 Sobic007G186300 Sobic001G054200--Sobic007G186300 Sobic001G054200--Sobic004G293700 Sobic009G246950 Sobic009G246950 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic006G232200 Sobic006G232200 Sobic001G054200--Sobic006G232200 Sobic003G115800 Sobic003G115800 Sobic001G054200--Sobic003G115800 Sobic004G083300--Sobic010G135000 Sobic002G134001 Sobic002G134001 Sobic004G083300--Sobic002G134001 Sobic004G327300 Sobic004G327300 Sobic004G083300--Sobic004G327300 Sobic004G083300--Sobic009G131100 Sobic004G083300--Sobic006G212100 Sobic009G174900 Sobic009G174900 Sobic004G083300--Sobic009G174900 Sobic004G083300--Sobic001G463100 Sobic004G083300--Sobic006G180200 Sobic001G415500 Sobic001G415500 Sobic004G083300--Sobic001G415500 Sobic010G204300 Sobic010G204300 Sobic010G199100--Sobic010G204300 Sobic001G422900 Sobic001G422900 Sobic010G199100--Sobic001G422900 Sobic001G067601 Sobic001G067601 Sobic010G199100--Sobic001G067601 Sobic002G093000 Sobic002G093000 Sobic010G199100--Sobic002G093000 Sobic001G037000 Sobic001G037000 Sobic010G199100--Sobic001G037000 Sobic001G019900 Sobic001G019900 Sobic010G199100--Sobic001G019900 Sobic001G324900 Sobic001G324900 Sobic010G199100--Sobic001G324900 Sobic010G204600 Sobic010G204600 Sobic010G199100--Sobic010G204600 Sobic008G161000 Sobic008G161000 Sobic010G199100--Sobic008G161000 Sobic001G138300--Sobic004G079100 Sobic003G350600 Sobic003G350600 Sobic001G138300--Sobic003G350600 Sobic001G430800 Sobic001G430800 Sobic001G138300--Sobic001G430800 Sobic004G231400 Sobic004G231400 Sobic001G138300--Sobic004G231400 Sobic001G138300--Sobic001G054200 Sobic001G138300--Sobic006G212100 Sobic001G138300--Sobic001G441600 Sobic001G138300--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G138300--Sobic002G129000 Sobic005G111100 Sobic005G111100 Sobic004G265700--Sobic005G111100 Sobic002G078400 Sobic002G078400 Sobic004G265700--Sobic002G078400 Sobic001G041100 Sobic001G041100 Sobic004G265700--Sobic001G041100 Sobic003G362400 Sobic003G362400 Sobic004G265700--Sobic003G362400 Sobic006G141500 Sobic006G141500 Sobic004G265700--Sobic006G141500 Sobic010G065400 Sobic010G065400 Sobic004G265700--Sobic010G065400 Sobic002G116200 Sobic002G116200 Sobic004G265700--Sobic002G116200 Sobic002G222900 Sobic002G222900 Sobic004G265700--Sobic002G222900 Sobic007G068000 Sobic007G068000 Sobic004G265700--Sobic007G068000 Sobic001G536500 Sobic001G536500 Sobic009G131100--Sobic001G536500 Sobic009G131100--Sobic002G078400 Sobic004G060600 Sobic004G060600 Sobic009G131100--Sobic004G060600 Sobic007G091000 Sobic007G091000 Sobic009G131100--Sobic007G091000 Sobic010G194900 Sobic010G194900 Sobic009G131100--Sobic010G194900 Sobic003G277000 Sobic003G277000 Sobic009G131100--Sobic003G277000 Sobic001G087900 Sobic001G087900 Sobic009G131100--Sobic001G087900 Sobic009G131100--Sobic004G265700 Sobic006G281200 Sobic006G281200 Sobic009G131100--Sobic006G281200
Octagon: transcription factors


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