Gene annotation
Transcriptome id Sobic.010G199100.1
Synonym Sb10g024780
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Z6A2
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G08139 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g42700.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051459
Brachypodium -
Barley HORVU7Hr1G092570.2 , HORVU7Hr1G092570.1
Wheat -
Populus -


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cDNA sequences
Sobic.010G199100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G204300 expressed protein -
2 Sobic.001G422900 zinc finger family protein, putative, expressed -
3 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
4 Sobic.002G093000 expressed protein -
5 Sobic.001G037000 PHD finger protein, putative, expressed -
6 Sobic.001G019900 zinc finger, C3HC4 type domain containing protein, expressed K15707: RING finger protein 170
7 Sobic.001G324900 proline-rich family protein, putative, expressed -
8 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
9 Sobic.008G161000 protein kinase domain containing protein, expressed -
10 Sobic.006G182100 ORM1, putative, expressed -
11 Sobic.005G228000 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
12 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
13 Sobic.001G095300 prenylated rab acceptor, putative, expressed -
14 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
15 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
16 Sobic.001G064800 expp1 protein precursor, putative, expressed -
17 Sobic.001G047700 expressed protein -
18 Sobic.001G441600 potyvirus VPg interacting protein, putative, expressed -
19 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
20 Sobic.007G195701 - -


Gene co-expression network
sample Sobic010G199100 Sobic010G199100 Sobic010G204300 Sobic010G204300 Sobic010G199100--Sobic010G204300 Sobic001G422900 Sobic001G422900 Sobic010G199100--Sobic001G422900 Sobic001G067601 Sobic001G067601 Sobic010G199100--Sobic001G067601 Sobic002G093000 Sobic002G093000 Sobic010G199100--Sobic002G093000 Sobic001G037000 Sobic001G037000 Sobic010G199100--Sobic001G037000 Sobic001G019900 Sobic001G019900 Sobic010G199100--Sobic001G019900 Sobic001G324900 Sobic001G324900 Sobic010G199100--Sobic001G324900 Sobic010G204600 Sobic010G204600 Sobic010G199100--Sobic010G204600 Sobic008G161000 Sobic008G161000 Sobic010G199100--Sobic008G161000 Sobic010G204300--Sobic008G161000 Sobic003G115800 Sobic003G115800 Sobic010G204300--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic010G204300--Sobic007G059900 Sobic001G147200 Sobic001G147200 Sobic010G204300--Sobic001G147200 Sobic002G296300 Sobic002G296300 Sobic010G204300--Sobic002G296300 Sobic002G202300 Sobic002G202300 Sobic010G204300--Sobic002G202300 Sobic003G181500 Sobic003G181500 Sobic010G204300--Sobic003G181500 Sobic006G062800 Sobic006G062800 Sobic010G204300--Sobic006G062800 Sobic010G246000 Sobic010G246000 Sobic010G204300--Sobic010G246000 Sobic002G245800 Sobic002G245800 Sobic001G422900--Sobic002G245800 Sobic001G422900--Sobic010G204600 Sobic001G422900--Sobic001G037000 Sobic001G095300 Sobic001G095300 Sobic001G422900--Sobic001G095300 Sobic001G422900--Sobic003G181500 Sobic003G249800 Sobic003G249800 Sobic001G422900--Sobic003G249800 Sobic005G229700 Sobic005G229700 Sobic001G422900--Sobic005G229700 Sobic002G211900 Sobic002G211900 Sobic001G422900--Sobic002G211900 Sobic002G405600 Sobic002G405600 Sobic001G422900--Sobic002G405600 Sobic001G067601--Sobic001G019900 Sobic009G023200 Sobic009G023200 Sobic001G067601--Sobic009G023200 Sobic002G046100 Sobic002G046100 Sobic001G067601--Sobic002G046100 Sobic010G217900 Sobic010G217900 Sobic001G067601--Sobic010G217900 Sobic003G063200 Sobic003G063200 Sobic001G067601--Sobic003G063200 Sobic001G067601--Sobic001G037000 Sobic005G228000 Sobic005G228000 Sobic001G067601--Sobic005G228000 Sobic001G067601--Sobic003G181500 Sobic003G162700 Sobic003G162700 Sobic001G067601--Sobic003G162700 Sobic001G034700 Sobic001G034700 Sobic002G093000--Sobic001G034700 Sobic005G168100 Sobic005G168100 Sobic002G093000--Sobic005G168100 Sobic001G533300 Sobic001G533300 Sobic002G093000--Sobic001G533300 Sobic002G093000--Sobic010G199100 Sobic003G150000 Sobic003G150000 Sobic002G093000--Sobic003G150000 Sobic002G093000--Sobic010G204600 Sobic008G185400 Sobic008G185400 Sobic002G093000--Sobic008G185400 Sobic003G367800 Sobic003G367800 Sobic002G093000--Sobic003G367800 Sobic002G093000--Sobic009G023200 Sobic001G037000--Sobic003G249800 Sobic001G037000--Sobic003G063200 Sobic001G037000--Sobic001G422900 Sobic001G037000--Sobic010G204600 Sobic001G037000--Sobic001G067601 Sobic009G016201 Sobic009G016201 Sobic001G037000--Sobic009G016201 Sobic003G265200 Sobic003G265200 Sobic001G037000--Sobic003G265200 Sobic002G205300 Sobic002G205300 Sobic001G037000--Sobic002G205300 Sobic001G037000--Sobic003G181500 Sobic001G019900--Sobic001G067601 Sobic001G019900--Sobic005G228000 Sobic001G019900--Sobic009G023200 Sobic003G350300 Sobic003G350300 Sobic001G019900--Sobic003G350300 Sobic001G019900--Sobic003G249800 Sobic001G019900--Sobic002G046100 Sobic001G445800 Sobic001G445800 Sobic001G019900--Sobic001G445800 Sobic002G212200 Sobic002G212200 Sobic001G019900--Sobic002G212200 Sobic003G321700 Sobic003G321700 Sobic001G019900--Sobic003G321700 Sobic002G022400 Sobic002G022400 Sobic001G324900--Sobic002G022400 Sobic004G247200 Sobic004G247200 Sobic001G324900--Sobic004G247200 Sobic001G525400 Sobic001G525400 Sobic001G324900--Sobic001G525400 Sobic002G280200 Sobic002G280200 Sobic001G324900--Sobic002G280200 Sobic001G324900--Sobic008G161000 Sobic001G324900--Sobic003G249800 Sobic001G324900--Sobic006G062800 Sobic001G324900--Sobic010G217900 Sobic001G324900--Sobic010G204300 Sobic010G204600--Sobic001G095300 Sobic010G204600--Sobic003G063200 Sobic010G204600--Sobic002G405600 Sobic004G157000 Sobic004G157000 Sobic010G204600--Sobic004G157000 Sobic010G204600--Sobic009G023200 Sobic009G129000 Sobic009G129000 Sobic010G204600--Sobic009G129000 Sobic001G055600 Sobic001G055600 Sobic010G204600--Sobic001G055600 Sobic003G202200 Sobic003G202200 Sobic010G204600--Sobic003G202200 Sobic009G033700 Sobic009G033700 Sobic010G204600--Sobic009G033700 Sobic008G161000--Sobic003G249800 Sobic008G161000--Sobic009G033700 Sobic009G152200 Sobic009G152200 Sobic008G161000--Sobic009G152200 Sobic008G161000--Sobic001G037000 Sobic008G161000--Sobic009G129000 Sobic008G161000--Sobic009G016201 Sobic008G161000--Sobic010G204300 Sobic008G161000--Sobic010G204600 Sobic010G213400 Sobic010G213400 Sobic008G161000--Sobic010G213400
Octagon: transcription factors


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