Gene annotation
Transcriptome id Sobic.001G509700.2
Synonym Sb01g047580
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide repeat domain containing protein, putative, expressed
UniProt A0A1Z5SBG7
Pfam PF13812 PF13041 PF14432 PF01535
Panther DB PTHR24015 PTHR24015:SF746
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G03880 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g32620.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a000558 , Zm00025a057335
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G070100 exostosin family domain containing protein, expressed -
2 Sobic.010G123100 transporter-related, putative, expressed -
3 Sobic.003G354500 methyltransferase, putative, expressed -
4 Sobic.008G131900 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@resistance protein LR10, putative, expressed -
5 Sobic.003G392100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptidase, putative, expressed K01392: thimet oligopeptidase
6 Sobic.005G133350 - -
7 Sobic.010G038200 CDT1A - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
8 Sobic.008G047500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.004G353300 growth regulator related protein, putative, expressed -
10 Sobic.002G052800 FAR1 family protein, expressed -
11 Sobic.001G534466 - -
12 Sobic.003G204100 expressed protein -
13 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
14 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.001G023500 expressed protein -
16 Sobic.004G199400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat protein PPR986-12, putative, expressed -
17 Sobic.003G352100 pentatricopeptide, putative, expressed -
18 Sobic.004G041100 ATEXO70G1, putative, expressed K07195: EXOC7, exocyst complex component 7
19 Sobic.010G024000 transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
20 Sobic.005G163600 dnaJ domain containing protein, expressed -


Gene co-expression network
sample Sobic001G509700 Sobic001G509700 Sobic004G070100 Sobic004G070100 Sobic001G509700--Sobic004G070100 Sobic010G123100 Sobic010G123100 Sobic001G509700--Sobic010G123100 Sobic003G354500 Sobic003G354500 Sobic001G509700--Sobic003G354500 Sobic008G131900 Sobic008G131900 Sobic001G509700--Sobic008G131900 Sobic003G392100 Sobic003G392100 Sobic001G509700--Sobic003G392100 Sobic005G133350 Sobic005G133350 Sobic001G509700--Sobic005G133350 Sobic010G038200 Sobic010G038200 Sobic001G509700--Sobic010G038200 Sobic008G047500 Sobic008G047500 Sobic001G509700--Sobic008G047500 Sobic004G353300 Sobic004G353300 Sobic001G509700--Sobic004G353300 Sobic004G070100--Sobic003G354500 Sobic004G070100--Sobic010G123100 Sobic004G070100--Sobic004G353300 Sobic004G070100--Sobic008G047500 Sobic007G096800 Sobic007G096800 Sobic004G070100--Sobic007G096800 Sobic003G359400 Sobic003G359400 Sobic004G070100--Sobic003G359400 Sobic003G204100 Sobic003G204100 Sobic004G070100--Sobic003G204100 Sobic004G070100--Sobic010G038200 Sobic004G000400 Sobic004G000400 Sobic004G070100--Sobic004G000400 Sobic010G123100--Sobic004G353300 Sobic004G298600 Sobic004G298600 Sobic010G123100--Sobic004G298600 Sobic010G274800 Sobic010G274800 Sobic010G123100--Sobic010G274800 Sobic008G095900 Sobic008G095900 Sobic010G123100--Sobic008G095900 Sobic001G308500 Sobic001G308500 Sobic010G123100--Sobic001G308500 Sobic001G385300 Sobic001G385300 Sobic010G123100--Sobic001G385300 Sobic008G085950 Sobic008G085950 Sobic010G123100--Sobic008G085950 Sobic007G105700 Sobic007G105700 Sobic010G123100--Sobic007G105700 Sobic006G265800 Sobic006G265800 Sobic010G123100--Sobic006G265800 Sobic002G308000 Sobic002G308000 Sobic003G354500--Sobic002G308000 Sobic002G271400 Sobic002G271400 Sobic003G354500--Sobic002G271400 Sobic004G306100 Sobic004G306100 Sobic003G354500--Sobic004G306100 Sobic003G354500--Sobic010G038200 Sobic001G433600 Sobic001G433600 Sobic003G354500--Sobic001G433600 Sobic006G127200 Sobic006G127200 Sobic003G354500--Sobic006G127200 Sobic010G257500 Sobic010G257500 Sobic003G354500--Sobic010G257500 Sobic003G354500--Sobic004G070100 Sobic008G004900 Sobic008G004900 Sobic003G354500--Sobic008G004900 Sobic002G173400 Sobic002G173400 Sobic008G131900--Sobic002G173400 Sobic008G131900--Sobic010G038200 Sobic009G136000 Sobic009G136000 Sobic008G131900--Sobic009G136000 Sobic010G024000 Sobic010G024000 Sobic008G131900--Sobic010G024000 Sobic010G030000 Sobic010G030000 Sobic008G131900--Sobic010G030000 Sobic001G486600 Sobic001G486600 Sobic008G131900--Sobic001G486600 Sobic002G052800 Sobic002G052800 Sobic008G131900--Sobic002G052800 Sobic010G222800 Sobic010G222800 Sobic008G131900--Sobic010G222800 Sobic006G193100 Sobic006G193100 Sobic008G131900--Sobic006G193100 Sobic003G392100--Sobic006G127200 Sobic002G426100 Sobic002G426100 Sobic003G392100--Sobic002G426100 Sobic002G095300 Sobic002G095300 Sobic003G392100--Sobic002G095300 Sobic002G123600 Sobic002G123600 Sobic003G392100--Sobic002G123600 Sobic003G144000 Sobic003G144000 Sobic003G392100--Sobic003G144000 Sobic001G199500 Sobic001G199500 Sobic003G392100--Sobic001G199500 Sobic009G120400 Sobic009G120400 Sobic003G392100--Sobic009G120400 Sobic010G143600 Sobic010G143600 Sobic003G392100--Sobic010G143600 Sobic003G392100--Sobic003G204100 Sobic005G133350--Sobic001G509700 Sobic005G164900 Sobic005G164900 Sobic005G133350--Sobic005G164900 Sobic003G008700 Sobic003G008700 Sobic005G133350--Sobic003G008700 Sobic009G185900 Sobic009G185900 Sobic005G133350--Sobic009G185900 Sobic002G113600 Sobic002G113600 Sobic005G133350--Sobic002G113600 Sobic001G220250 Sobic001G220250 Sobic005G133350--Sobic001G220250 Sobic009G129400 Sobic009G129400 Sobic005G133350--Sobic009G129400 Sobic005G133350--Sobic006G193100 Sobic001G286400 Sobic001G286400 Sobic005G133350--Sobic001G286400 Sobic010G038200--Sobic009G136000 Sobic010G038200--Sobic010G030000 Sobic010G009700 Sobic010G009700 Sobic010G038200--Sobic010G009700 Sobic010G038200--Sobic008G131900 Sobic001G248400 Sobic001G248400 Sobic010G038200--Sobic001G248400 Sobic005G060100 Sobic005G060100 Sobic010G038200--Sobic005G060100 Sobic009G214500 Sobic009G214500 Sobic010G038200--Sobic009G214500 Sobic003G216600 Sobic003G216600 Sobic010G038200--Sobic003G216600 Sobic010G038200--Sobic002G052800 Sobic008G047500--Sobic008G085950 Sobic008G047500--Sobic003G204100 Sobic003G194800 Sobic003G194800 Sobic008G047500--Sobic003G194800 Sobic007G102000 Sobic007G102000 Sobic008G047500--Sobic007G102000 Sobic002G390800 Sobic002G390800 Sobic008G047500--Sobic002G390800 Sobic008G047500--Sobic002G173400 Sobic008G047500--Sobic004G298600 Sobic008G047500--Sobic007G105700 Sobic008G047500--Sobic010G009700 Sobic004G353300--Sobic001G433600 Sobic007G189100 Sobic007G189100 Sobic004G353300--Sobic007G189100 Sobic004G353300--Sobic007G105700 Sobic002G392400 Sobic002G392400 Sobic004G353300--Sobic002G392400 Sobic004G353300--Sobic010G123100 Sobic004G353300--Sobic002G308000 Sobic005G067966 Sobic005G067966 Sobic004G353300--Sobic005G067966 Sobic004G353300--Sobic001G308500 Sobic004G353300--Sobic008G085950
Octagon: transcription factors


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