Gene annotation
Transcriptome id Sobic.002G027500.1
Synonym AAP6, Sb02g002440
Functional annotation amino acid transporter, putative, expressed
UniProt C5X8V1
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF278
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G49630 : amino acid permease 6
RAP-DB (Rice) LOC_Os07g04180.1 : amino acid transporter, putative, expressed
MaizeGDB (Corn) Zm00025a025708 , Zm00025a030927 , Zm00025a011043 , Zm00025a034135 , Zm00025a044966 , Zm00025a026558 , Zm00025a054082 , Zm00025a051049 , Zm00025a012741
Brachypodium KQJ91992 , KQK20976 , KQJ91991 , PNT71213 , PNT71214 , KQJ89071 , KQK06164 , KQK18009
Barley HORVU5Hr1G037660.9 , HORVU5Hr1G037660.8 , HORVU5Hr1G037660.5 , HORVU5Hr1G037660.4 , HORVU5Hr1G037660.6 , HORVU5Hr1G037660.1 , HORVU5Hr1G037660.3 , HORVU7Hr1G088560.8 , HORVU7Hr1G088560.6 , HORVU7Hr1G088560.7 , HORVU7Hr1G088560.4 , HORVU7Hr1G088560.5 , HORVU7Hr1G088560.2 , HORVU7Hr1G088560.3 , HORVU7Hr1G088560.1 , HORVU3Hr1G081570.6 , HORVU3Hr1G081570.7 , HORVU3Hr1G081570.4 , HORVU3Hr1G081570.5 , HORVU3Hr1G081570.2 , HORVU3Hr1G081570.3 , HORVU3Hr1G081570.1 , HORVU3Hr1G081570.8 , HORVU3Hr1G081570.9 , HORVU3Hr1G081570.10 , HORVU7Hr1G038330.8 , HORVU7Hr1G038330.1 , HORVU7Hr1G038330.2 , HORVU7Hr1G038330.3 , HORVU7Hr1G038330.4 , HORVU7Hr1G038330.5 , HORVU7Hr1G038330.6 , HORVU7Hr1G038330.7 , HORVU2Hr1G084710.1 , HORVU2Hr1G084800.1 , HORVU4Hr1G043680.1 , HORVU4Hr1G043680.3 , HORVU4Hr1G043680.2 , HORVU4Hr1G043680.5 , HORVU4Hr1G043680.4 , HORVU5Hr1G037030.1 , HORVU5Hr1G037030.2 , HORVU2Hr1G061190.7 , HORVU2Hr1G061190.5 , HORVU2Hr1G061190.4 , HORVU2Hr1G061190.3 , HORVU2Hr1G061190.2 , HORVU2Hr1G061190.1
Wheat TraesCS4B02G100800 , TraesCS4D02G097400 , TraesCS7A02G188200 , TraesCS3B02G441100 , TraesCS5B02G116100 , TraesCS7A02G356600 , TraesCS2D02G256000 , TraesCS2A02G268200 , TraesCS2B02G266600 , TraesCS3D02G402200 , TraesCS4A02G215300 , TraesCS3B02G441300 , TraesCS5A02G115100 , TraesCS2B02G367000 , TraesCS5D02G125700 , TraesCS3A02G406900 , TraesCS7D02G366200 , TraesCS2D02G347000 , TraesCS2D02G346500 , TraesCS7D02G189000 , TraesCS7B02G093200 , TraesCS2A02G348600
Populus -


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cDNA sequences
Sobic.002G027500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G000801 - -
2 Sobic.001G286000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
3 Sobic.009G156600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
4 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
5 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
6 Sobic.010G150200 OsFBX209 - F-box domain containing protein, expressed -
7 Sobic.004G155150 - -
8 Sobic.001G243000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote
9 Sobic.009G201500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@HSP101 Heat shock protein 101("PubMedID : 26759170,PubMedID : 24597475")@heat shock protein 101, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
10 Sobic.003G373150 - -
11 Sobic.003G078501 - -
12 Sobic.007G051600 - -
13 Sobic.010G006700 auxin-induced protein 5NG4, putative, expressed -
14 Sobic.004G257350 - -
15 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
16 Sobic.010G071700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
17 Sobic.007G166900 auxin-induced protein 5NG4, putative, expressed -
18 Sobic.001G125100 pre-mRNA-splicing factor, putative, expressed K12817: PRPF18, pre-mRNA-splicing factor 18
19 Sobic.003G342600 DUF640 domain containing protein, putative, expressed -
20 Sobic.001G159850 - -


Gene co-expression network
sample Sobic002G027500 Sobic002G027500 Sobic009G000801 Sobic009G000801 Sobic002G027500--Sobic009G000801 Sobic001G286000 Sobic001G286000 Sobic002G027500--Sobic001G286000 Sobic009G156600 Sobic009G156600 Sobic002G027500--Sobic009G156600 Sobic009G000700 Sobic009G000700 Sobic002G027500--Sobic009G000700 Sobic004G310600 Sobic004G310600 Sobic002G027500--Sobic004G310600 Sobic010G150200 Sobic010G150200 Sobic002G027500--Sobic010G150200 Sobic004G155150 Sobic004G155150 Sobic002G027500--Sobic004G155150 Sobic001G243000 Sobic001G243000 Sobic002G027500--Sobic001G243000 Sobic009G201500 Sobic009G201500 Sobic002G027500--Sobic009G201500 Sobic009G000801--Sobic004G155150 Sobic004G257350 Sobic004G257350 Sobic009G000801--Sobic004G257350 Sobic009G000801--Sobic009G156600 Sobic009G000801--Sobic009G000700 Sobic001G507500 Sobic001G507500 Sobic009G000801--Sobic001G507500 Sobic009G000801--Sobic001G286000 Sobic009G000801--Sobic002G027500 Sobic002G229600 Sobic002G229600 Sobic009G000801--Sobic002G229600 Sobic009G000801--Sobic004G310600 Sobic001G286000--Sobic009G000700 Sobic001G286000--Sobic004G310600 Sobic001G286000--Sobic004G155150 Sobic007G051600 Sobic007G051600 Sobic001G286000--Sobic007G051600 Sobic001G286000--Sobic009G201500 Sobic006G267900 Sobic006G267900 Sobic001G286000--Sobic006G267900 Sobic001G125100 Sobic001G125100 Sobic001G286000--Sobic001G125100 Sobic003G078501 Sobic003G078501 Sobic001G286000--Sobic003G078501 Sobic010G220400 Sobic010G220400 Sobic001G286000--Sobic010G220400 Sobic009G156600--Sobic009G000700 Sobic009G156600--Sobic004G155150 Sobic009G156600--Sobic004G310600 Sobic004G245900 Sobic004G245900 Sobic009G156600--Sobic004G245900 Sobic007G089533 Sobic007G089533 Sobic009G156600--Sobic007G089533 Sobic009G156600--Sobic009G000801 Sobic009G156600--Sobic003G078501 Sobic009G216900 Sobic009G216900 Sobic009G156600--Sobic009G216900 Sobic003G227600 Sobic003G227600 Sobic009G156600--Sobic003G227600 Sobic009G000700--Sobic004G310600 Sobic009G000700--Sobic003G078501 Sobic009G000700--Sobic004G155150 Sobic010G006700 Sobic010G006700 Sobic009G000700--Sobic010G006700 Sobic004G331300 Sobic004G331300 Sobic009G000700--Sobic004G331300 Sobic003G233900 Sobic003G233900 Sobic009G000700--Sobic003G233900 Sobic003G373150 Sobic003G373150 Sobic009G000700--Sobic003G373150 Sobic009G000700--Sobic006G267900 Sobic009G000700--Sobic001G125100 Sobic004G310600--Sobic009G000700 Sobic004G310600--Sobic003G078501 Sobic004G310600--Sobic010G006700 Sobic004G310600--Sobic003G373150 Sobic004G310600--Sobic004G155150 Sobic004G310600--Sobic004G331300 Sobic004G310600--Sobic003G233900 Sobic004G310600--Sobic004G257350 Sobic004G310600--Sobic006G267900 Sobic010G150200--Sobic001G286000 Sobic004G234300 Sobic004G234300 Sobic010G150200--Sobic004G234300 Sobic001G106000 Sobic001G106000 Sobic010G150200--Sobic001G106000 Sobic010G033300 Sobic010G033300 Sobic010G150200--Sobic010G033300 Sobic001G450800 Sobic001G450800 Sobic010G150200--Sobic001G450800 Sobic010G150200--Sobic009G156600 Sobic002G267800 Sobic002G267800 Sobic010G150200--Sobic002G267800 Sobic004G285100 Sobic004G285100 Sobic010G150200--Sobic004G285100 Sobic004G261200 Sobic004G261200 Sobic010G150200--Sobic004G261200 Sobic004G155150--Sobic009G000700 Sobic004G155150--Sobic004G310600 Sobic004G155150--Sobic003G078501 Sobic004G155150--Sobic003G233900 Sobic004G155150--Sobic006G267900 Sobic004G155150--Sobic010G006700 Sobic004G155150--Sobic004G257350 Sobic004G155150--Sobic003G373150 Sobic004G155150--Sobic001G125100 Sobic001G243000--Sobic001G125100 Sobic001G243000--Sobic003G373150 Sobic001G243000--Sobic010G006700 Sobic001G159850 Sobic001G159850 Sobic001G243000--Sobic001G159850 Sobic006G005600 Sobic006G005600 Sobic009G201500--Sobic006G005600 Sobic001G092600 Sobic001G092600 Sobic009G201500--Sobic001G092600 Sobic006G055600 Sobic006G055600 Sobic009G201500--Sobic006G055600 Sobic004G283201 Sobic004G283201 Sobic009G201500--Sobic004G283201 Sobic009G201500--Sobic001G286000 Sobic009G201500--Sobic003G373150 Sobic004G321000 Sobic004G321000 Sobic009G201500--Sobic004G321000 Sobic009G201500--Sobic003G233900 Sobic004G283300 Sobic004G283300 Sobic009G201500--Sobic004G283300
Octagon: transcription factors


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