Gene annotation
Transcriptome id Sobic.002G301600.1
Synonym Sb02g033210
Functional annotation amidase, putative, expressed
UniProt C5X8I3
Pfam PF01425
Panther DB PTHR11895 PTHR11895:SF68
NCBI CDD KOG1211; Amidases
KEGG Orthology K01426; E3.5.1.4, amidase
Gene Ontology GO:0016884; carbon-nitrogen ligase activity, with glutamine as amido-N-donor


Orthologs (automatic annotation)
TAIR AT4G34880 : Amidase family protein
RAP-DB (Rice) LOC_Os04g10460.1 : amidase, putative, expressed
MaizeGDB (Corn) Zm00025a048022
Brachypodium -
Barley HORVU5Hr1G087780.5 , HORVU5Hr1G087780.10 , HORVU5Hr1G087780.9 , HORVU5Hr1G087780.8 , HORVU5Hr1G087780.4 , HORVU5Hr1G087780.3 , HORVU5Hr1G087780.2 , HORVU2Hr1G003810.2 , HORVU2Hr1G003810.1
Wheat TraesCS2B02G035800 , TraesCS2B02G037100 , TraesCS3D02G364700 , TraesCS2D02G026900 , TraesCS2B02G037800 , TraesCS2D02G027200 , TraesCS2A02G025200 , TraesCS3D02G364700 , TraesCS2B02G037500 , TraesCS2D02G027000 , TraesCSU02G233300 , TraesCS2B02G037400 , TraesCS2A02G025000 , TraesCS2B02G035900 , TraesCS2A02G064000
Populus -


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cDNA sequences
Sobic.002G301600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G301700 amidase, putative, expressed K01426: E3.5.1.4, amidase
2 Sobic.005G084000 expressed protein -
3 Sobic.010G015800 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
4 Sobic.007G059500 down-regulated TF in developmental senescence(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
5 Sobic.006G010800 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
6 Sobic.008G104801 - -
7 Sobic.008G117800 OsGrx_C12 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
8 Sobic.001G420300 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
9 Sobic.008G151000 wall-associated receptor kinase 3 precursor, putative, expressed -
10 Sobic.001G240800 tyrosine protein kinase domain containing protein, putative, expressed -
11 Sobic.001G377500 POEI47 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
12 Sobic.004G088100 myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed K10781: fatty acyl-ACP thioesterase B
13 Sobic.009G190500 calreticulin precursor protein, putative, expressed K08057: calreticulin
14 Sobic.010G241300 -(PubMedID : 26465154)@OsCML29 - Calmodulin-related calcium sensor protein, expressed -
15 Sobic.007G171950 - -
16 Sobic.005G127000 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
17 Sobic.001G384800 expressed protein -
18 Sobic.003G386600 calreticulin precursor protein, putative, expressed K08057: calreticulin
19 Sobic.010G122200 cadmium tolerance factor, putative, expressed -
20 Sobic.005G096000 resistance protein, putative, expressed -


Gene co-expression network
sample Sobic002G301600 Sobic002G301600 Sobic002G301700 Sobic002G301700 Sobic002G301600--Sobic002G301700 Sobic005G084000 Sobic005G084000 Sobic002G301600--Sobic005G084000 Sobic010G015800 Sobic010G015800 Sobic002G301600--Sobic010G015800 Sobic007G059500 Sobic007G059500 Sobic002G301600--Sobic007G059500 Sobic006G010800 Sobic006G010800 Sobic002G301600--Sobic006G010800 Sobic008G104801 Sobic008G104801 Sobic002G301600--Sobic008G104801 Sobic008G117800 Sobic008G117800 Sobic002G301600--Sobic008G117800 Sobic001G420300 Sobic001G420300 Sobic002G301600--Sobic001G420300 Sobic008G151000 Sobic008G151000 Sobic002G301600--Sobic008G151000 Sobic004G023200 Sobic004G023200 Sobic002G301700--Sobic004G023200 Sobic002G033800 Sobic002G033800 Sobic002G301700--Sobic002G033800 Sobic010G019700 Sobic010G019700 Sobic002G301700--Sobic010G019700 Sobic002G301700--Sobic002G301600 Sobic001G379700 Sobic001G379700 Sobic002G301700--Sobic001G379700 Sobic001G308800 Sobic001G308800 Sobic002G301700--Sobic001G308800 Sobic001G527000 Sobic001G527000 Sobic002G301700--Sobic001G527000 Sobic010G208400 Sobic010G208400 Sobic002G301700--Sobic010G208400 Sobic002G353300 Sobic002G353300 Sobic002G301700--Sobic002G353300 Sobic001G495300 Sobic001G495300 Sobic005G084000--Sobic001G495300 Sobic007G210600 Sobic007G210600 Sobic005G084000--Sobic007G210600 Sobic008G131700 Sobic008G131700 Sobic005G084000--Sobic008G131700 Sobic001G142400 Sobic001G142400 Sobic005G084000--Sobic001G142400 Sobic003G074700 Sobic003G074700 Sobic005G084000--Sobic003G074700 Sobic004G143400 Sobic004G143400 Sobic005G084000--Sobic004G143400 Sobic009G083300 Sobic009G083300 Sobic005G084000--Sobic009G083300 Sobic007G201400 Sobic007G201400 Sobic005G084000--Sobic007G201400 Sobic003G069200 Sobic003G069200 Sobic005G084000--Sobic003G069200 Sobic010G122200 Sobic010G122200 Sobic010G015800--Sobic010G122200 Sobic010G015800--Sobic002G301600 Sobic010G015800--Sobic002G301700 Sobic010G015800--Sobic010G019700 Sobic005G154100 Sobic005G154100 Sobic010G015800--Sobic005G154100 Sobic005G076500 Sobic005G076500 Sobic010G015800--Sobic005G076500 Sobic006G201700 Sobic006G201700 Sobic010G015800--Sobic006G201700 Sobic008G099600 Sobic008G099600 Sobic010G015800--Sobic008G099600 Sobic010G015800--Sobic006G010800 Sobic005G127000 Sobic005G127000 Sobic007G059500--Sobic005G127000 Sobic010G241300 Sobic010G241300 Sobic007G059500--Sobic010G241300 Sobic008G183200 Sobic008G183200 Sobic007G059500--Sobic008G183200 Sobic001G498300 Sobic001G498300 Sobic007G059500--Sobic001G498300 Sobic001G377500 Sobic001G377500 Sobic007G059500--Sobic001G377500 Sobic010G218600 Sobic010G218600 Sobic007G059500--Sobic010G218600 Sobic008G063100 Sobic008G063100 Sobic007G059500--Sobic008G063100 Sobic002G281000 Sobic002G281000 Sobic007G059500--Sobic002G281000 Sobic005G021600 Sobic005G021600 Sobic007G059500--Sobic005G021600 Sobic006G010800--Sobic010G241300 Sobic009G190500 Sobic009G190500 Sobic006G010800--Sobic009G190500 Sobic001G240800 Sobic001G240800 Sobic006G010800--Sobic001G240800 Sobic007G213300 Sobic007G213300 Sobic006G010800--Sobic007G213300 Sobic010G225600 Sobic010G225600 Sobic006G010800--Sobic010G225600 Sobic007G129201 Sobic007G129201 Sobic006G010800--Sobic007G129201 Sobic009G084500 Sobic009G084500 Sobic006G010800--Sobic009G084500 Sobic009G034600 Sobic009G034600 Sobic006G010800--Sobic009G034600 Sobic006G010800--Sobic007G059500 Sobic001G233400 Sobic001G233400 Sobic008G104801--Sobic001G233400 Sobic006G060200 Sobic006G060200 Sobic008G104801--Sobic006G060200 Sobic001G217700 Sobic001G217700 Sobic008G104801--Sobic001G217700 Sobic008G104801--Sobic005G084000 Sobic003G137100 Sobic003G137100 Sobic008G104801--Sobic003G137100 Sobic006G103400 Sobic006G103400 Sobic008G104801--Sobic006G103400 Sobic008G104801--Sobic004G023200 Sobic002G289400 Sobic002G289400 Sobic008G104801--Sobic002G289400 Sobic008G104801--Sobic002G301700 Sobic008G117800--Sobic001G217700 Sobic003G052300 Sobic003G052300 Sobic008G117800--Sobic003G052300 Sobic008G117800--Sobic007G201400 Sobic008G117800--Sobic007G059500 Sobic008G101500 Sobic008G101500 Sobic008G117800--Sobic008G101500 Sobic008G118000 Sobic008G118000 Sobic008G117800--Sobic008G118000 Sobic008G117800--Sobic002G301700 Sobic008G117800--Sobic005G127000 Sobic008G117800--Sobic005G084000 Sobic003G412900 Sobic003G412900 Sobic001G420300--Sobic003G412900 Sobic001G069000 Sobic001G069000 Sobic001G420300--Sobic001G069000 Sobic001G420300--Sobic003G137100 Sobic002G172700 Sobic002G172700 Sobic001G420300--Sobic002G172700 Sobic008G062400 Sobic008G062400 Sobic001G420300--Sobic008G062400 Sobic001G314200 Sobic001G314200 Sobic001G420300--Sobic001G314200 Sobic010G153900 Sobic010G153900 Sobic001G420300--Sobic010G153900 Sobic003G371600 Sobic003G371600 Sobic001G420300--Sobic003G371600 Sobic003G387100 Sobic003G387100 Sobic001G420300--Sobic003G387100 Sobic008G151000--Sobic005G127000 Sobic006G047300 Sobic006G047300 Sobic008G151000--Sobic006G047300 Sobic003G265500 Sobic003G265500 Sobic008G151000--Sobic003G265500 Sobic004G152100 Sobic004G152100 Sobic008G151000--Sobic004G152100 Sobic001G186200 Sobic001G186200 Sobic008G151000--Sobic001G186200 Sobic008G151000--Sobic007G201400 Sobic001G333000 Sobic001G333000 Sobic008G151000--Sobic001G333000 Sobic004G314800 Sobic004G314800 Sobic008G151000--Sobic004G314800 Sobic008G151000--Sobic007G059500
Octagon: transcription factors


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