Gene annotation
Transcriptome id Sobic.006G010800.1
Synonym Sb06g001080
Functional annotation EF hand family protein, putative, expressed
UniProt C5YBR9
Pfam PF13499
Panther DB PTHR10891 PTHR10891:SF533
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G24110 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os05g05460.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a012248
Brachypodium PNT71836 , KQK07552 , KQK07550 , KQK07551
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G010800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G241300 -(PubMedID : 26465154)@OsCML29 - Calmodulin-related calcium sensor protein, expressed -
2 Sobic.009G190500 calreticulin precursor protein, putative, expressed K08057: calreticulin
3 Sobic.001G240800 tyrosine protein kinase domain containing protein, putative, expressed -
4 Sobic.007G213300 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
5 Sobic.010G225600 - -
6 Sobic.007G129201 - -
7 Sobic.009G084500 ethylene-responsive protein related, putative, expressed -
8 Sobic.009G034600 expressed protein -
9 Sobic.007G059500 down-regulated TF in developmental senescence(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
10 Sobic.005G127000 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
11 Sobic.002G301600 amidase, putative, expressed K01426: E3.5.1.4, amidase
12 Sobic.002G301700 amidase, putative, expressed K01426: E3.5.1.4, amidase
13 Sobic.004G096100 expressed protein -
14 Sobic.005G222900 RGH1A, putative, expressed -
15 Sobic.010G019700 cytochrome P450 86A1, putative, expressed -
16 Sobic.003G386600 calreticulin precursor protein, putative, expressed K08057: calreticulin
17 Sobic.003G108600 heat shock protein DnaJ, putative, expressed -
18 Sobic.008G186400 Leucine-rich repeat transmembrane protein kinase family protein(PubMedID : 26465154)@receptor-like protein kinase HAIKU2 precursor, putative, expressed -
19 Sobic.001G291200 - -
20 Sobic.007G062500 expressed protein -


Gene co-expression network
sample Sobic006G010800 Sobic006G010800 Sobic010G241300 Sobic010G241300 Sobic006G010800--Sobic010G241300 Sobic009G190500 Sobic009G190500 Sobic006G010800--Sobic009G190500 Sobic001G240800 Sobic001G240800 Sobic006G010800--Sobic001G240800 Sobic007G213300 Sobic007G213300 Sobic006G010800--Sobic007G213300 Sobic010G225600 Sobic010G225600 Sobic006G010800--Sobic010G225600 Sobic007G129201 Sobic007G129201 Sobic006G010800--Sobic007G129201 Sobic009G084500 Sobic009G084500 Sobic006G010800--Sobic009G084500 Sobic009G034600 Sobic009G034600 Sobic006G010800--Sobic009G034600 Sobic007G059500 Sobic007G059500 Sobic006G010800--Sobic007G059500 Sobic008G183200 Sobic008G183200 Sobic010G241300--Sobic008G183200 Sobic010G241300--Sobic007G059500 Sobic005G127000 Sobic005G127000 Sobic010G241300--Sobic005G127000 Sobic004G122200 Sobic004G122200 Sobic010G241300--Sobic004G122200 Sobic003G397200 Sobic003G397200 Sobic010G241300--Sobic003G397200 Sobic010G241300--Sobic006G010800 Sobic010G241300--Sobic009G034600 Sobic005G111500 Sobic005G111500 Sobic010G241300--Sobic005G111500 Sobic010G241300--Sobic007G213300 Sobic009G190500--Sobic007G213300 Sobic009G190500--Sobic006G010800 Sobic002G301700 Sobic002G301700 Sobic009G190500--Sobic002G301700 Sobic009G190500--Sobic010G241300 Sobic001G006400 Sobic001G006400 Sobic009G190500--Sobic001G006400 Sobic009G190500--Sobic007G059500 Sobic009G190500--Sobic001G240800 Sobic006G220800 Sobic006G220800 Sobic009G190500--Sobic006G220800 Sobic006G201700 Sobic006G201700 Sobic009G190500--Sobic006G201700 Sobic004G096100 Sobic004G096100 Sobic001G240800--Sobic004G096100 Sobic001G240800--Sobic010G241300 Sobic005G072200 Sobic005G072200 Sobic001G240800--Sobic005G072200 Sobic001G291200 Sobic001G291200 Sobic001G240800--Sobic001G291200 Sobic004G227300 Sobic004G227300 Sobic001G240800--Sobic004G227300 Sobic004G088100 Sobic004G088100 Sobic001G240800--Sobic004G088100 Sobic007G179750 Sobic007G179750 Sobic001G240800--Sobic007G179750 Sobic006G102400 Sobic006G102400 Sobic001G240800--Sobic006G102400 Sobic003G264901 Sobic003G264901 Sobic001G240800--Sobic003G264901 Sobic007G213300--Sobic010G241300 Sobic002G316700 Sobic002G316700 Sobic007G213300--Sobic002G316700 Sobic007G213300--Sobic009G190500 Sobic009G143100 Sobic009G143100 Sobic007G213300--Sobic009G143100 Sobic002G030500 Sobic002G030500 Sobic007G213300--Sobic002G030500 Sobic007G223500 Sobic007G223500 Sobic007G213300--Sobic007G223500 Sobic001G078400 Sobic001G078400 Sobic007G213300--Sobic001G078400 Sobic007G213300--Sobic006G220800 Sobic001G338700 Sobic001G338700 Sobic007G213300--Sobic001G338700 Sobic009G202400 Sobic009G202400 Sobic010G225600--Sobic009G202400 Sobic003G108600 Sobic003G108600 Sobic010G225600--Sobic003G108600 Sobic005G097800 Sobic005G097800 Sobic010G225600--Sobic005G097800 Sobic006G135100 Sobic006G135100 Sobic010G225600--Sobic006G135100 Sobic010G225600--Sobic005G127000 Sobic001G068301 Sobic001G068301 Sobic010G225600--Sobic001G068301 Sobic001G317400 Sobic001G317400 Sobic010G225600--Sobic001G317400 Sobic001G391900 Sobic001G391900 Sobic010G225600--Sobic001G391900 Sobic003G068800 Sobic003G068800 Sobic010G225600--Sobic003G068800 Sobic008G060300 Sobic008G060300 Sobic007G129201--Sobic008G060300 Sobic009G252100 Sobic009G252100 Sobic007G129201--Sobic009G252100 Sobic005G193600 Sobic005G193600 Sobic007G129201--Sobic005G193600 Sobic003G098700 Sobic003G098700 Sobic007G129201--Sobic003G098700 Sobic005G193500 Sobic005G193500 Sobic007G129201--Sobic005G193500 Sobic007G037800 Sobic007G037800 Sobic007G129201--Sobic007G037800 Sobic007G129201--Sobic009G202400 Sobic006G060800 Sobic006G060800 Sobic007G129201--Sobic006G060800 Sobic004G019100 Sobic004G019100 Sobic007G129201--Sobic004G019100 Sobic004G269000 Sobic004G269000 Sobic009G084500--Sobic004G269000 Sobic005G100600 Sobic005G100600 Sobic009G084500--Sobic005G100600 Sobic007G136800 Sobic007G136800 Sobic009G084500--Sobic007G136800 Sobic001G332500 Sobic001G332500 Sobic009G084500--Sobic001G332500 Sobic006G173600 Sobic006G173600 Sobic009G084500--Sobic006G173600 Sobic004G174400 Sobic004G174400 Sobic009G084500--Sobic004G174400 Sobic010G186000 Sobic010G186000 Sobic009G084500--Sobic010G186000 Sobic006G092000 Sobic006G092000 Sobic009G084500--Sobic006G092000 Sobic001G048100 Sobic001G048100 Sobic009G084500--Sobic001G048100 Sobic008G063200 Sobic008G063200 Sobic009G034600--Sobic008G063200 Sobic003G421400 Sobic003G421400 Sobic009G034600--Sobic003G421400 Sobic010G269400 Sobic010G269400 Sobic009G034600--Sobic010G269400 Sobic001G102300 Sobic001G102300 Sobic009G034600--Sobic001G102300 Sobic003G292600 Sobic003G292600 Sobic009G034600--Sobic003G292600 Sobic006G258700 Sobic006G258700 Sobic009G034600--Sobic006G258700 Sobic006G188000 Sobic006G188000 Sobic009G034600--Sobic006G188000 Sobic010G207500 Sobic010G207500 Sobic009G034600--Sobic010G207500 Sobic009G034600--Sobic010G241300 Sobic007G059500--Sobic005G127000 Sobic007G059500--Sobic010G241300 Sobic007G059500--Sobic008G183200 Sobic001G498300 Sobic001G498300 Sobic007G059500--Sobic001G498300 Sobic001G377500 Sobic001G377500 Sobic007G059500--Sobic001G377500 Sobic010G218600 Sobic010G218600 Sobic007G059500--Sobic010G218600 Sobic008G063100 Sobic008G063100 Sobic007G059500--Sobic008G063100 Sobic002G281000 Sobic002G281000 Sobic007G059500--Sobic002G281000 Sobic005G021600 Sobic005G021600 Sobic007G059500--Sobic005G021600
Octagon: transcription factors


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