Gene annotation
| Transcriptome id | Sobic.002G316900.1 |
|---|---|
| Synonym | ACO3, Sb02g034590, |
| Functional annotation | Up-reguralion under drought (PubMedID : 24916767) Up-reguralion under combine stress of drought and heat (PubMedID : 24916767) aconitate hydratase protein, putative, expressed |
| UniProt | C5X9Z9 |
| Pfam | PF00694 PF00330 |
| Panther DB | PTHR11670 PTHR11670:SF40 |
| NCBI CDD | - |
| KEGG Orthology | K01681; ACO, aconitate hydratase |
| Gene Ontology | GO:0008152; metabolic process |
Orthologs (automatic annotation)
| TAIR | AT2G05710 : aconitase 3 |
|---|---|
| RAP-DB (Rice) | LOC_Os08g09200.1 : aconitate hydratase protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a053380 , Zm00025a014769 , Zm00025a029963 |
| Brachypodium | - |
| Barley | HORVU6Hr1G091950.20 , HORVU6Hr1G091950.16 , HORVU6Hr1G091950.17 , HORVU6Hr1G091950.14 , HORVU6Hr1G091950.15 , HORVU6Hr1G091950.11 , HORVU6Hr1G091950.18 , HORVU6Hr1G091950.19 , HORVU4Hr1G080640.1 , HORVU4Hr1G080640.2 , HORVU4Hr1G080640.3 , HORVU4Hr1G080640.4 , HORVU4Hr1G080640.5 , HORVU4Hr1G080640.6 , HORVU4Hr1G080640.7 , HORVU4Hr1G080640.8 , HORVU6Hr1G091950.4 , HORVU6Hr1G091950.5 , HORVU6Hr1G091950.6 , HORVU6Hr1G091950.7 , HORVU6Hr1G091950.1 , HORVU6Hr1G091950.2 , HORVU6Hr1G091950.3 , HORVU6Hr1G091950.8 , HORVU6Hr1G091950.9 |
| Wheat | TraesCS5A02G505000 , TraesCS5A02G505000 , TraesCS6A02G400000 , TraesCS4B02G335100 , TraesCS6D02G384200 , TraesCS6D02G384200 , TraesCS6B02G440200 |
| Populus | - |
JBrowse
| Sobic.002G316900 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G292400 | NADP-dependent malic enzyme(PubMedID : 26186930)@NADP-malic enzyme(PubMedID : 26904072)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@C4 carbon fixation(PubMedID : 28620409)@NADP-dependent malic enzyme, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 2 | Sobic.003G278400 | DUF581 domain containing protein, expressed | - |
| 3 | Sobic.010G101300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dehydrogenase E1 component domain containing protein, expressed | K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit |
| 4 | Sobic.003G194400 | HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 5 | Sobic.006G114700 | Up-reguralion under drought(PubMedID : 24916767)@phosphofructokinase 2("PubMedID : 26759170,PubMedID : 24597475")@phosphofructokinase, putative, expressed | K00850: pfkA, 6-phosphofructokinase 1 |
| 6 | Sobic.004G047900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed | - |
| 7 | Sobic.003G011000 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@AAA-type ATPase family protein, putative, expressed | - |
| 8 | Sobic.001G307000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 9 | Sobic.006G034300 | Transketolase(PubMedID : 26186930)@"Transketolase, putative (Os)"(PubMedID : 27208977)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transketolase, chloroplast precursor, putative, expressed | K00615: E2.2.1.1, tktA, transketolase |
| 10 | Sobic.001G200700 | expressed protein | - |
| 11 | Sobic.005G183200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@14-3-3 protein, putative, expressed | K06630: 14-3-3 protein epsilon |
| 12 | Sobic.002G141800 | expressed protein | - |
| 13 | Sobic.004G243300 | expressed protein | - |
| 14 | Sobic.003G011400 | similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed | - |
| 15 | Sobic.009G171400 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 16 | Sobic.009G116700 | "dehydrin SbDHN1, maps into mapped into a stay green mQTL (QSTG meta1.9)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@rab16/17 homolog(PubMedID : 15579713)@dehydrin, putative, expressed | - |
| 17 | Sobic.003G244100 | "ABA-Responsive Element (ABRE) -binding factor BZ-1 basic-leucine zipper, maped into a stay green QTL (QSTG12_3"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@transcription factor, putative, expressed | K09060: plant G-box-binding factor |
| 18 | Sobic.007G109800 | Up-reguralion under drought(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed | - |
| 19 | Sobic.001G396900 | expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 20 | Sobic.009G222000 | LTPL153 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
