Gene annotation
Transcriptome id Sobic.002G323200.1
Synonym Sb02g035070, COBL10
Functional annotation COBRA-like protein precursor, putative, expressed
UniProt A0A1B6QEM2
Pfam PF04833
Panther DB PTHR31052 PTHR31052:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016049; cell growth GO:0010215cellulose microfibril organization


Orthologs (automatic annotation)
TAIR AT3G20580 : COBRA-like protein 10 precursor
RAP-DB (Rice) LOC_Os06g47110.1 : COBRA-like protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a048251
Brachypodium KQK15941
Barley HORVU7Hr1G028350.1
Wheat TraesCS7D02G136500 , TraesCS7B02G037700 , TraesCS7A02G136600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G072600 expressed protein -
2 Sobic.005G192000 receptor kinase, putative, expressed -
3 Sobic.002G029000 protein kinase, putative, expressed -
4 Sobic.005G209300 GRAS family transcription factor domain containing protein, expressed -
5 Sobic.003G434100 - -
6 Sobic.002G210150 - -
7 Sobic.002G061732 - -
8 Sobic.007G166500 expansin precursor, putative, expressed -
9 Sobic.005G181500 expressed protein -
10 Sobic.009G166000 IQ calmodulin-binding motif domain containing protein, expressed -
11 Sobic.004G331500 similar to Cation-transporting ATPase(PubMedID : 29862293)@ATPase 8, plasma membrane-type, putative, expressed K01535: PMA1, H+-transporting ATPase
12 Sobic.001G024250 - -
13 Sobic.007G146300 pectinesterase, putative, expressed -
14 Sobic.004G041800 expressed protein -
15 Sobic.004G080000 polygalacturonase, putative, expressed K01213: galacturan 1,4-alpha-galacturonidase
16 Sobic.006G044800 drought-induced protein 1, putative, expressed -
17 Sobic.010G034200 pectate lyase precursor, putative, expressed K01728: pectate lyase
18 Sobic.004G287200 OsSub26 - Putative Subtilisin homologue, expressed -
19 Sobic.009G165900 protein kinase APK1B, chloroplast precursor, putative, expressed -
20 Sobic.002G405300 START domain containing protein, expressed -


Gene co-expression network
sample Sobic002G323200 Sobic002G323200 Sobic009G072600 Sobic009G072600 Sobic002G323200--Sobic009G072600 Sobic005G192000 Sobic005G192000 Sobic002G323200--Sobic005G192000 Sobic002G029000 Sobic002G029000 Sobic002G323200--Sobic002G029000 Sobic005G209300 Sobic005G209300 Sobic002G323200--Sobic005G209300 Sobic003G434100 Sobic003G434100 Sobic002G323200--Sobic003G434100 Sobic002G210150 Sobic002G210150 Sobic002G323200--Sobic002G210150 Sobic002G061732 Sobic002G061732 Sobic002G323200--Sobic002G061732 Sobic007G166500 Sobic007G166500 Sobic002G323200--Sobic007G166500 Sobic005G181500 Sobic005G181500 Sobic002G323200--Sobic005G181500 Sobic009G072600--Sobic002G323200 Sobic009G072600--Sobic002G061732 Sobic009G072600--Sobic005G192000 Sobic009G072600--Sobic003G434100 Sobic009G072600--Sobic002G029000 Sobic005G199800 Sobic005G199800 Sobic009G072600--Sobic005G199800 Sobic009G072600--Sobic007G166500 Sobic009G072600--Sobic002G210150 Sobic009G072600--Sobic005G209300 Sobic005G192000--Sobic002G210150 Sobic005G192000--Sobic002G323200 Sobic010G034200 Sobic010G034200 Sobic005G192000--Sobic010G034200 Sobic002G429000 Sobic002G429000 Sobic005G192000--Sobic002G429000 Sobic009G166000 Sobic009G166000 Sobic005G192000--Sobic009G166000 Sobic009G227500 Sobic009G227500 Sobic005G192000--Sobic009G227500 Sobic004G331500 Sobic004G331500 Sobic005G192000--Sobic004G331500 Sobic001G400400 Sobic001G400400 Sobic005G192000--Sobic001G400400 Sobic005G192000--Sobic005G209300 Sobic002G029000--Sobic007G166500 Sobic002G029000--Sobic003G434100 Sobic002G029000--Sobic002G323200 Sobic007G146300 Sobic007G146300 Sobic002G029000--Sobic007G146300 Sobic001G024250 Sobic001G024250 Sobic002G029000--Sobic001G024250 Sobic002G029000--Sobic005G209300 Sobic004G080000 Sobic004G080000 Sobic002G029000--Sobic004G080000 Sobic004G041800 Sobic004G041800 Sobic002G029000--Sobic004G041800 Sobic002G029000--Sobic009G072600 Sobic005G209300--Sobic004G041800 Sobic005G209300--Sobic004G080000 Sobic005G209300--Sobic004G331500 Sobic001G466100 Sobic001G466100 Sobic005G209300--Sobic001G466100 Sobic005G209300--Sobic007G146300 Sobic010G034300 Sobic010G034300 Sobic005G209300--Sobic010G034300 Sobic009G165900 Sobic009G165900 Sobic005G209300--Sobic009G165900 Sobic005G209300--Sobic009G166000 Sobic010G254100 Sobic010G254100 Sobic005G209300--Sobic010G254100 Sobic003G434100--Sobic007G166500 Sobic003G434100--Sobic002G029000 Sobic003G434100--Sobic002G323200 Sobic003G434100--Sobic009G072600 Sobic003G434100--Sobic007G146300 Sobic003G434100--Sobic001G024250 Sobic001G445400 Sobic001G445400 Sobic003G434100--Sobic001G445400 Sobic003G434100--Sobic005G209300 Sobic001G152800 Sobic001G152800 Sobic003G434100--Sobic001G152800 Sobic002G210150--Sobic005G192000 Sobic002G210150--Sobic010G034200 Sobic006G219700 Sobic006G219700 Sobic002G210150--Sobic006G219700 Sobic002G210150--Sobic001G400400 Sobic002G210150--Sobic009G227500 Sobic002G395100 Sobic002G395100 Sobic002G210150--Sobic002G395100 Sobic009G259600 Sobic009G259600 Sobic002G210150--Sobic009G259600 Sobic002G210150--Sobic002G429000 Sobic002G210150--Sobic009G166000 Sobic002G061732--Sobic009G072600 Sobic002G061732--Sobic002G323200 Sobic002G061732--Sobic005G192000 Sobic002G061732--Sobic003G434100 Sobic002G061732--Sobic002G210150 Sobic002G061732--Sobic005G199800 Sobic002G061732--Sobic002G029000 Sobic002G061732--Sobic005G181500 Sobic002G061732--Sobic005G209300 Sobic007G166500--Sobic002G029000 Sobic007G166500--Sobic003G434100 Sobic007G166500--Sobic001G445400 Sobic007G166500--Sobic001G152800 Sobic007G166500--Sobic007G146300 Sobic007G166500--Sobic002G323200 Sobic007G166500--Sobic001G024250 Sobic007G166500--Sobic004G080000 Sobic007G166500--Sobic005G209300 Sobic009G167201 Sobic009G167201 Sobic005G181500--Sobic009G167201 Sobic005G181500--Sobic009G166000 Sobic005G181500--Sobic004G331500 Sobic006G044800 Sobic006G044800 Sobic005G181500--Sobic006G044800 Sobic001G202900 Sobic001G202900 Sobic005G181500--Sobic001G202900 Sobic005G181500--Sobic005G209300 Sobic005G181500--Sobic010G034200 Sobic005G181500--Sobic005G192000 Sobic004G287200 Sobic004G287200 Sobic005G181500--Sobic004G287200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.