Gene annotation
Transcriptome id Sobic.002G338200.1
Synonym Sb02g036280
Functional annotation MSP domain containing protein, putative, expressed
UniProt C5XBJ1
Pfam PF00635
Panther DB PTHR10809 PTHR10809:SF56
NCBI CDD KOG0439; VAMP-associated protein involved in inositol metabolism
KEGG Orthology -
Gene Ontology GO:0005789; endoplasmic reticulum membrane


Orthologs (automatic annotation)
TAIR AT4G21450 : PapD-like superfamily protein
RAP-DB (Rice) LOC_Os07g37270.1 : MSP domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK15777 , KQK15776
Barley HORVU2Hr1G041130.6 , HORVU2Hr1G041130.5 , HORVU2Hr1G041130.4 , HORVU2Hr1G041130.3 , HORVU2Hr1G041130.2 , HORVU2Hr1G041130.1
Wheat TraesCS2D02G210100 , TraesCS2B02G233200 , TraesCS2A02G206000
Populus -


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cDNA sequences
Sobic.002G338200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G434600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@AGC_PVPK_like_kin82y.8 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
2 Sobic.003G201700 tyrosine protein kinase domain containing protein, putative, expressed -
3 Sobic.001G379900 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
4 Sobic.003G406600 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GW8/OsPL16(Ortholog in rice:Wang et al., 2012)"(PubMedID : 31659873)@OsSPL2 - SBP-box gene family member, expressed -
5 Sobic.003G009200 expressed protein -
6 Sobic.004G305400 coronatine-insensitive protein 1, putative, expressed -
7 Sobic.001G467200 NPGR1, putative, expressed -
8 Sobic.002G229900 heat shock protein DnaJ, putative, expressed -
9 Sobic.004G352100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
10 Sobic.004G004600 IQ calmodulin-binding motif family protein, putative, expressed -
11 Sobic.004G197600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
12 Sobic.009G141700 expressed protein -
13 Sobic.002G318600 RNA recognition motif containing protein, putative, expressed -
14 Sobic.002G366900 receptor-like protein kinase precursor, putative, expressed -
15 Sobic.001G194600 Trihelix Family(PubMedID : 24864043)@expressed protein -
16 Sobic.007G209600 ENT domain containing protein, expressed -
17 Sobic.009G006900 ZOS5-01 - C2H2 zinc finger protein, expressed -
18 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
19 Sobic.004G231200 amine oxidase, putative, expressed K11450: KDM1A, AOF2, [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
20 Sobic.007G023100 CCT motif family protein, expressed -


Gene co-expression network
sample Sobic002G338200 Sobic002G338200 Sobic001G434600 Sobic001G434600 Sobic002G338200--Sobic001G434600 Sobic003G201700 Sobic003G201700 Sobic002G338200--Sobic003G201700 Sobic001G379900 Sobic001G379900 Sobic002G338200--Sobic001G379900 Sobic003G406600 Sobic003G406600 Sobic002G338200--Sobic003G406600 Sobic003G009200 Sobic003G009200 Sobic002G338200--Sobic003G009200 Sobic004G305400 Sobic004G305400 Sobic002G338200--Sobic004G305400 Sobic001G467200 Sobic001G467200 Sobic002G338200--Sobic001G467200 Sobic002G229900 Sobic002G229900 Sobic002G338200--Sobic002G229900 Sobic004G352100 Sobic004G352100 Sobic002G338200--Sobic004G352100 Sobic001G434600--Sobic002G338200 Sobic002G222500 Sobic002G222500 Sobic001G434600--Sobic002G222500 Sobic005G164900 Sobic005G164900 Sobic001G434600--Sobic005G164900 Sobic003G012900 Sobic003G012900 Sobic001G434600--Sobic003G012900 Sobic004G257600 Sobic004G257600 Sobic001G434600--Sobic004G257600 Sobic008G125700 Sobic008G125700 Sobic001G434600--Sobic008G125700 Sobic008G114900 Sobic008G114900 Sobic001G434600--Sobic008G114900 Sobic009G146700 Sobic009G146700 Sobic001G434600--Sobic009G146700 Sobic001G320500 Sobic001G320500 Sobic001G434600--Sobic001G320500 Sobic006G167300 Sobic006G167300 Sobic003G201700--Sobic006G167300 Sobic004G225700 Sobic004G225700 Sobic003G201700--Sobic004G225700 Sobic004G134100 Sobic004G134100 Sobic003G201700--Sobic004G134100 Sobic002G002100 Sobic002G002100 Sobic003G201700--Sobic002G002100 Sobic002G218700 Sobic002G218700 Sobic003G201700--Sobic002G218700 Sobic003G277900 Sobic003G277900 Sobic003G201700--Sobic003G277900 Sobic010G050700 Sobic010G050700 Sobic003G201700--Sobic010G050700 Sobic008G086200 Sobic008G086200 Sobic003G201700--Sobic008G086200 Sobic001G217100 Sobic001G217100 Sobic003G201700--Sobic001G217100 Sobic004G003700 Sobic004G003700 Sobic001G379900--Sobic004G003700 Sobic010G077000 Sobic010G077000 Sobic001G379900--Sobic010G077000 Sobic010G276600 Sobic010G276600 Sobic001G379900--Sobic010G276600 Sobic006G221800 Sobic006G221800 Sobic001G379900--Sobic006G221800 Sobic001G493900 Sobic001G493900 Sobic001G379900--Sobic001G493900 Sobic006G163300 Sobic006G163300 Sobic001G379900--Sobic006G163300 Sobic001G143400 Sobic001G143400 Sobic001G379900--Sobic001G143400 Sobic003G010700 Sobic003G010700 Sobic001G379900--Sobic003G010700 Sobic003G307200 Sobic003G307200 Sobic001G379900--Sobic003G307200 Sobic010G173700 Sobic010G173700 Sobic003G406600--Sobic010G173700 Sobic001G116600 Sobic001G116600 Sobic003G406600--Sobic001G116600 Sobic007G023100 Sobic007G023100 Sobic003G406600--Sobic007G023100 Sobic003G356600 Sobic003G356600 Sobic003G406600--Sobic003G356600 Sobic007G070200 Sobic007G070200 Sobic003G406600--Sobic007G070200 Sobic003G406600--Sobic001G467200 Sobic006G046600 Sobic006G046600 Sobic003G406600--Sobic006G046600 Sobic010G029000 Sobic010G029000 Sobic003G406600--Sobic010G029000 Sobic003G230000 Sobic003G230000 Sobic003G406600--Sobic003G230000 Sobic001G507200 Sobic001G507200 Sobic003G009200--Sobic001G507200 Sobic009G049200 Sobic009G049200 Sobic003G009200--Sobic009G049200 Sobic003G311500 Sobic003G311500 Sobic003G009200--Sobic003G311500 Sobic004G034300 Sobic004G034300 Sobic003G009200--Sobic004G034300 Sobic010G103500 Sobic010G103500 Sobic003G009200--Sobic010G103500 Sobic007G051400 Sobic007G051400 Sobic003G009200--Sobic007G051400 Sobic002G418100 Sobic002G418100 Sobic003G009200--Sobic002G418100 Sobic004G231200 Sobic004G231200 Sobic003G009200--Sobic004G231200 Sobic008G192700 Sobic008G192700 Sobic003G009200--Sobic008G192700 Sobic001G335900 Sobic001G335900 Sobic004G305400--Sobic001G335900 Sobic002G366900 Sobic002G366900 Sobic004G305400--Sobic002G366900 Sobic010G017800 Sobic010G017800 Sobic004G305400--Sobic010G017800 Sobic004G305400--Sobic002G218700 Sobic009G226400 Sobic009G226400 Sobic004G305400--Sobic009G226400 Sobic006G091000 Sobic006G091000 Sobic004G305400--Sobic006G091000 Sobic004G347100 Sobic004G347100 Sobic004G305400--Sobic004G347100 Sobic005G059400 Sobic005G059400 Sobic004G305400--Sobic005G059400 Sobic002G039200 Sobic002G039200 Sobic004G305400--Sobic002G039200 Sobic001G467200--Sobic003G406600 Sobic004G004600 Sobic004G004600 Sobic001G467200--Sobic004G004600 Sobic010G095800 Sobic010G095800 Sobic001G467200--Sobic010G095800 Sobic001G467200--Sobic003G356600 Sobic002G400600 Sobic002G400600 Sobic001G467200--Sobic002G400600 Sobic002G115200 Sobic002G115200 Sobic001G467200--Sobic002G115200 Sobic001G467200--Sobic010G276600 Sobic001G467200--Sobic003G230000 Sobic003G302000 Sobic003G302000 Sobic001G467200--Sobic003G302000 Sobic002G430900 Sobic002G430900 Sobic002G229900--Sobic002G430900 Sobic002G219900 Sobic002G219900 Sobic002G229900--Sobic002G219900 Sobic007G125700 Sobic007G125700 Sobic002G229900--Sobic007G125700 Sobic004G111000 Sobic004G111000 Sobic002G229900--Sobic004G111000 Sobic001G120900 Sobic001G120900 Sobic002G229900--Sobic001G120900 Sobic002G394800 Sobic002G394800 Sobic002G229900--Sobic002G394800 Sobic010G149600 Sobic010G149600 Sobic002G229900--Sobic010G149600 Sobic009G141700 Sobic009G141700 Sobic002G229900--Sobic009G141700 Sobic002G184400 Sobic002G184400 Sobic002G229900--Sobic002G184400 Sobic007G209600 Sobic007G209600 Sobic004G352100--Sobic007G209600 Sobic002G203500 Sobic002G203500 Sobic004G352100--Sobic002G203500 Sobic010G026100 Sobic010G026100 Sobic004G352100--Sobic010G026100 Sobic004G352100--Sobic002G184400 Sobic008G151600 Sobic008G151600 Sobic004G352100--Sobic008G151600 Sobic004G352100--Sobic007G070200 Sobic009G087700 Sobic009G087700 Sobic004G352100--Sobic009G087700 Sobic007G161600 Sobic007G161600 Sobic004G352100--Sobic007G161600 Sobic006G202100 Sobic006G202100 Sobic004G352100--Sobic006G202100
Octagon: transcription factors


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