Gene annotation
Transcriptome id Sobic.004G197600.1
Synonym MRH5, SHV3, Sb04g024440, GPDL2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
UniProt C5XWE5
Pfam PF03009
Panther DB PTHR23344 PTHR23344:SF8
NCBI CDD KOG2258; Glycerophosphoryl diester phosphodiesterase
KEGG Orthology -
Gene Ontology GO:0008081; phosphoric diester hydrolase activity GO:0006629lipid metabolic process GO:0008889glycerophosphodiester phosphodiesterase activity


Orthologs (automatic annotation)
TAIR AT4G26690 : PLC-like phosphodiesterase family protein
RAP-DB (Rice) LOC_Os02g37590.1 : glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a021360 , Zm00025a031778 , Zm00025a056279
Brachypodium KQK00095 , KQJ83113 , KQJ83112
Barley HORVU6Hr1G052420.14 , HORVU6Hr1G052420.11 , HORVU6Hr1G052420.10 , HORVU6Hr1G052420.13 , HORVU6Hr1G052420.12 , HORVU6Hr1G052420.9 , HORVU6Hr1G052420.8 , HORVU6Hr1G052420.1 , HORVU6Hr1G052420.3 , HORVU6Hr1G052420.2 , HORVU6Hr1G052420.5 , HORVU6Hr1G052420.4 , HORVU6Hr1G052420.7 , HORVU6Hr1G052420.6
Wheat TraesCS6D02G189300 , TraesCS6B02G226700 , TraesCS6A02G200600 , TraesCS6B02G226700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G236600 oligopeptidase, putative, expressed K01410: mitochondrial intermediate peptidase
2 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
3 Sobic.003G092700 xylosyltransferase, putative, expressed -
4 Sobic.004G275400 RING-H2 finger protein ATL5G, putative, expressed -
5 Sobic.003G345200 protein kinase family protein, putative, expressed -
6 Sobic.009G161200 membrane associated DUF588 domain containing protein, putative, expressed -
7 Sobic.003G134800 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
8 Sobic.001G108400 LRR receptor-like protein kinase, putative, expressed -
9 Sobic.009G001200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
10 Sobic.003G143700 ATP-citrate synthase subunit 1, putative, expressed K01648: ATP citrate (pro-S)-lyase
11 Sobic.007G010900 esterase, putative, expressed -
12 Sobic.002G039200 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
13 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
14 Sobic.010G003100 monocopper oxidase, putative, expressed -
15 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
16 Sobic.008G015200 NAP1, putative, expressed K05750: NCKAP1, NCK-associated protein 1
17 Sobic.009G073400 galactosyltransferase family protein, putative, expressed -
18 Sobic.004G336600 PCNA - Putative DNA replicative polymerase clamp, expressed K04802: proliferating cell nuclear antigen
19 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
20 Sobic.010G029000 expressed protein -


Gene co-expression network
sample Sobic004G197600 Sobic004G197600 Sobic010G236600 Sobic010G236600 Sobic004G197600--Sobic010G236600 Sobic004G249300 Sobic004G249300 Sobic004G197600--Sobic004G249300 Sobic003G092700 Sobic003G092700 Sobic004G197600--Sobic003G092700 Sobic004G275400 Sobic004G275400 Sobic004G197600--Sobic004G275400 Sobic003G345200 Sobic003G345200 Sobic004G197600--Sobic003G345200 Sobic009G161200 Sobic009G161200 Sobic004G197600--Sobic009G161200 Sobic003G134800 Sobic003G134800 Sobic004G197600--Sobic003G134800 Sobic001G108400 Sobic001G108400 Sobic004G197600--Sobic001G108400 Sobic009G001200 Sobic009G001200 Sobic004G197600--Sobic009G001200 Sobic006G208400 Sobic006G208400 Sobic010G236600--Sobic006G208400 Sobic010G188000 Sobic010G188000 Sobic010G236600--Sobic010G188000 Sobic009G045900 Sobic009G045900 Sobic010G236600--Sobic009G045900 Sobic001G460500 Sobic001G460500 Sobic010G236600--Sobic001G460500 Sobic003G008600 Sobic003G008600 Sobic010G236600--Sobic003G008600 Sobic002G145300 Sobic002G145300 Sobic010G236600--Sobic002G145300 Sobic010G250800 Sobic010G250800 Sobic010G236600--Sobic010G250800 Sobic001G368100 Sobic001G368100 Sobic010G236600--Sobic001G368100 Sobic002G056400 Sobic002G056400 Sobic010G236600--Sobic002G056400 Sobic002G341800 Sobic002G341800 Sobic004G249300--Sobic002G341800 Sobic009G201800 Sobic009G201800 Sobic004G249300--Sobic009G201800 Sobic001G115500 Sobic001G115500 Sobic004G249300--Sobic001G115500 Sobic002G077900 Sobic002G077900 Sobic004G249300--Sobic002G077900 Sobic008G083400 Sobic008G083400 Sobic004G249300--Sobic008G083400 Sobic010G247400 Sobic010G247400 Sobic004G249300--Sobic010G247400 Sobic003G118400 Sobic003G118400 Sobic004G249300--Sobic003G118400 Sobic009G102900 Sobic009G102900 Sobic004G249300--Sobic009G102900 Sobic001G370300 Sobic001G370300 Sobic004G249300--Sobic001G370300 Sobic003G319000 Sobic003G319000 Sobic003G092700--Sobic003G319000 Sobic003G312400 Sobic003G312400 Sobic003G092700--Sobic003G312400 Sobic002G141700 Sobic002G141700 Sobic003G092700--Sobic002G141700 Sobic001G145500 Sobic001G145500 Sobic003G092700--Sobic001G145500 Sobic001G542900 Sobic001G542900 Sobic003G092700--Sobic001G542900 Sobic004G083000 Sobic004G083000 Sobic003G092700--Sobic004G083000 Sobic006G252200 Sobic006G252200 Sobic003G092700--Sobic006G252200 Sobic010G088300 Sobic010G088300 Sobic003G092700--Sobic010G088300 Sobic002G194800 Sobic002G194800 Sobic003G092700--Sobic002G194800 Sobic008G191500 Sobic008G191500 Sobic004G275400--Sobic008G191500 Sobic009G151700 Sobic009G151700 Sobic004G275400--Sobic009G151700 Sobic007G139500 Sobic007G139500 Sobic004G275400--Sobic007G139500 Sobic003G017500 Sobic003G017500 Sobic004G275400--Sobic003G017500 Sobic001G196000 Sobic001G196000 Sobic004G275400--Sobic001G196000 Sobic007G173000 Sobic007G173000 Sobic004G275400--Sobic007G173000 Sobic001G159800 Sobic001G159800 Sobic004G275400--Sobic001G159800 Sobic002G161700 Sobic002G161700 Sobic004G275400--Sobic002G161700 Sobic002G313600 Sobic002G313600 Sobic004G275400--Sobic002G313600 Sobic009G073400 Sobic009G073400 Sobic003G345200--Sobic009G073400 Sobic003G345200--Sobic009G151700 Sobic010G054600 Sobic010G054600 Sobic003G345200--Sobic010G054600 Sobic006G172200 Sobic006G172200 Sobic003G345200--Sobic006G172200 Sobic003G345200--Sobic009G001200 Sobic004G119700 Sobic004G119700 Sobic003G345200--Sobic004G119700 Sobic009G206500 Sobic009G206500 Sobic003G345200--Sobic009G206500 Sobic010G067800 Sobic010G067800 Sobic003G345200--Sobic010G067800 Sobic006G140100 Sobic006G140100 Sobic003G345200--Sobic006G140100 Sobic002G128000 Sobic002G128000 Sobic009G161200--Sobic002G128000 Sobic007G044400 Sobic007G044400 Sobic009G161200--Sobic007G044400 Sobic009G161200--Sobic001G542900 Sobic003G442300 Sobic003G442300 Sobic009G161200--Sobic003G442300 Sobic008G018000 Sobic008G018000 Sobic009G161200--Sobic008G018000 Sobic010G001800 Sobic010G001800 Sobic009G161200--Sobic010G001800 Sobic006G079900 Sobic006G079900 Sobic009G161200--Sobic006G079900 Sobic003G245600 Sobic003G245600 Sobic009G161200--Sobic003G245600 Sobic007G217400 Sobic007G217400 Sobic009G161200--Sobic007G217400 Sobic002G070600 Sobic002G070600 Sobic003G134800--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic003G134800--Sobic008G072200 Sobic003G134800--Sobic002G141700 Sobic010G178600 Sobic010G178600 Sobic003G134800--Sobic010G178600 Sobic001G117800 Sobic001G117800 Sobic003G134800--Sobic001G117800 Sobic002G423500 Sobic002G423500 Sobic003G134800--Sobic002G423500 Sobic001G220900 Sobic001G220900 Sobic003G134800--Sobic001G220900 Sobic001G151600 Sobic001G151600 Sobic003G134800--Sobic001G151600 Sobic003G143700 Sobic003G143700 Sobic003G134800--Sobic003G143700 Sobic001G108400--Sobic007G044400 Sobic003G410600 Sobic003G410600 Sobic001G108400--Sobic003G410600 Sobic001G108400--Sobic002G313600 Sobic001G108400--Sobic009G001200 Sobic001G404700 Sobic001G404700 Sobic001G108400--Sobic001G404700 Sobic006G207400 Sobic006G207400 Sobic001G108400--Sobic006G207400 Sobic001G108400--Sobic003G017500 Sobic001G169800 Sobic001G169800 Sobic001G108400--Sobic001G169800 Sobic001G026600 Sobic001G026600 Sobic001G108400--Sobic001G026600 Sobic009G001200--Sobic003G410600 Sobic009G001200--Sobic003G345200 Sobic009G001200--Sobic001G108400 Sobic009G001200--Sobic004G119700 Sobic009G001200--Sobic002G161700 Sobic010G003100 Sobic010G003100 Sobic009G001200--Sobic010G003100 Sobic004G197400 Sobic004G197400 Sobic009G001200--Sobic004G197400 Sobic001G122100 Sobic001G122100 Sobic009G001200--Sobic001G122100 Sobic001G051300 Sobic001G051300 Sobic009G001200--Sobic001G051300
Octagon: transcription factors


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