Gene annotation
Transcriptome id Sobic.009G161200.1
Synonym Sb09g022380
Functional annotation membrane associated DUF588 domain containing protein, putative, expressed
UniProt C5YZ79
Pfam PF04535
Panther DB PTHR32021 PTHR32021:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G53850 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os05g38250.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a037178
Brachypodium -
Barley HORVU3Hr1G085820.1 , HORVU3Hr1G085820.2
Wheat TraesCS3B02G395500 , TraesCS3A02G363100
Populus -


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cDNA sequences
Sobic.009G161200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G128000 receptor protein kinase, putative, expressed -
2 Sobic.007G044400 MSP domain containing protein, expressed -
3 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
4 Sobic.003G442300 NAD dependent epimerase/dehydratase family protein, putative, expressed K12449: UDP-apiose/xylose synthase
5 Sobic.008G018000 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
6 Sobic.010G001800 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
7 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8
8 Sobic.003G245600 3-5 exonuclease domain-containing protein, putative, expressed -
9 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
10 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
11 Sobic.003G348200 Lung seven transmembrane receptor domain containing protein, putative, expressed -
12 Sobic.007G183800 ankyrin repeat-containing protein, putative, expressed -
13 Sobic.001G505000 cyclin-dependent kinases regulatory subunit 1, putative, expressed K02219: cyclin-dependent kinase regulatory subunit CKS1
14 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
15 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3
16 Sobic.004G336600 PCNA - Putative DNA replicative polymerase clamp, expressed K04802: proliferating cell nuclear antigen
17 Sobic.003G190800 GA18326-PA, putative, expressed -
18 Sobic.007G176800 acyl carrier protein, putative, expressed -
19 Sobic.005G047000 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
20 Sobic.001G412500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K18732: SARNP, CIP29, SAP domain-containing ribonucleoprotein


Gene co-expression network
sample Sobic009G161200 Sobic009G161200 Sobic002G128000 Sobic002G128000 Sobic009G161200--Sobic002G128000 Sobic007G044400 Sobic007G044400 Sobic009G161200--Sobic007G044400 Sobic001G542900 Sobic001G542900 Sobic009G161200--Sobic001G542900 Sobic003G442300 Sobic003G442300 Sobic009G161200--Sobic003G442300 Sobic008G018000 Sobic008G018000 Sobic009G161200--Sobic008G018000 Sobic010G001800 Sobic010G001800 Sobic009G161200--Sobic010G001800 Sobic006G079900 Sobic006G079900 Sobic009G161200--Sobic006G079900 Sobic003G245600 Sobic003G245600 Sobic009G161200--Sobic003G245600 Sobic007G217400 Sobic007G217400 Sobic009G161200--Sobic007G217400 Sobic003G085900 Sobic003G085900 Sobic002G128000--Sobic003G085900 Sobic010G092400 Sobic010G092400 Sobic002G128000--Sobic010G092400 Sobic002G237000 Sobic002G237000 Sobic002G128000--Sobic002G237000 Sobic004G327600 Sobic004G327600 Sobic002G128000--Sobic004G327600 Sobic004G075900 Sobic004G075900 Sobic002G128000--Sobic004G075900 Sobic001G105800 Sobic001G105800 Sobic002G128000--Sobic001G105800 Sobic004G229200 Sobic004G229200 Sobic002G128000--Sobic004G229200 Sobic002G289800 Sobic002G289800 Sobic002G128000--Sobic002G289800 Sobic002G178800 Sobic002G178800 Sobic002G128000--Sobic002G178800 Sobic001G196100 Sobic001G196100 Sobic007G044400--Sobic001G196100 Sobic009G189200 Sobic009G189200 Sobic007G044400--Sobic009G189200 Sobic001G116000 Sobic001G116000 Sobic007G044400--Sobic001G116000 Sobic001G026600 Sobic001G026600 Sobic007G044400--Sobic001G026600 Sobic002G313600 Sobic002G313600 Sobic007G044400--Sobic002G313600 Sobic006G102900 Sobic006G102900 Sobic007G044400--Sobic006G102900 Sobic009G059500 Sobic009G059500 Sobic007G044400--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic007G044400--Sobic002G186900 Sobic007G183800 Sobic007G183800 Sobic007G044400--Sobic007G183800 Sobic001G542900--Sobic007G217400 Sobic002G423800 Sobic002G423800 Sobic001G542900--Sobic002G423800 Sobic004G335000 Sobic004G335000 Sobic001G542900--Sobic004G335000 Sobic008G110500 Sobic008G110500 Sobic001G542900--Sobic008G110500 Sobic003G043400 Sobic003G043400 Sobic001G542900--Sobic003G043400 Sobic001G444300 Sobic001G444300 Sobic001G542900--Sobic001G444300 Sobic002G141700 Sobic002G141700 Sobic001G542900--Sobic002G141700 Sobic009G164700 Sobic009G164700 Sobic001G542900--Sobic009G164700 Sobic007G176200 Sobic007G176200 Sobic001G542900--Sobic007G176200 Sobic001G401600 Sobic001G401600 Sobic003G442300--Sobic001G401600 Sobic002G246900 Sobic002G246900 Sobic003G442300--Sobic002G246900 Sobic006G218600 Sobic006G218600 Sobic003G442300--Sobic006G218600 Sobic009G181500 Sobic009G181500 Sobic003G442300--Sobic009G181500 Sobic001G521100 Sobic001G521100 Sobic003G442300--Sobic001G521100 Sobic010G051100 Sobic010G051100 Sobic003G442300--Sobic010G051100 Sobic001G025900 Sobic001G025900 Sobic003G442300--Sobic001G025900 Sobic007G176800 Sobic007G176800 Sobic003G442300--Sobic007G176800 Sobic003G442300--Sobic006G102900 Sobic001G431700 Sobic001G431700 Sobic008G018000--Sobic001G431700 Sobic003G287300 Sobic003G287300 Sobic008G018000--Sobic003G287300 Sobic008G018000--Sobic006G079900 Sobic008G093200 Sobic008G093200 Sobic008G018000--Sobic008G093200 Sobic006G052400 Sobic006G052400 Sobic008G018000--Sobic006G052400 Sobic004G138300 Sobic004G138300 Sobic008G018000--Sobic004G138300 Sobic003G028100 Sobic003G028100 Sobic008G018000--Sobic003G028100 Sobic009G012700 Sobic009G012700 Sobic008G018000--Sobic009G012700 Sobic003G367900 Sobic003G367900 Sobic008G018000--Sobic003G367900 Sobic001G440900 Sobic001G440900 Sobic010G001800--Sobic001G440900 Sobic007G108100 Sobic007G108100 Sobic010G001800--Sobic007G108100 Sobic002G241500 Sobic002G241500 Sobic010G001800--Sobic002G241500 Sobic010G159100 Sobic010G159100 Sobic010G001800--Sobic010G159100 Sobic001G505000 Sobic001G505000 Sobic010G001800--Sobic001G505000 Sobic008G008300 Sobic008G008300 Sobic010G001800--Sobic008G008300 Sobic010G001800--Sobic008G093200 Sobic001G108400 Sobic001G108400 Sobic010G001800--Sobic001G108400 Sobic009G001200 Sobic009G001200 Sobic010G001800--Sobic009G001200 Sobic006G079900--Sobic007G217400 Sobic009G124400 Sobic009G124400 Sobic006G079900--Sobic009G124400 Sobic003G190800 Sobic003G190800 Sobic006G079900--Sobic003G190800 Sobic002G331300 Sobic002G331300 Sobic006G079900--Sobic002G331300 Sobic006G079900--Sobic003G028100 Sobic006G079900--Sobic001G542900 Sobic006G079900--Sobic001G431700 Sobic006G079900--Sobic003G367900 Sobic001G404100 Sobic001G404100 Sobic006G079900--Sobic001G404100 Sobic003G245600--Sobic002G128000 Sobic003G245600--Sobic004G327600 Sobic003G245600--Sobic002G178800 Sobic003G245600--Sobic004G229200 Sobic003G245600--Sobic001G440900 Sobic003G245600--Sobic009G161200 Sobic003G245600--Sobic002G237000 Sobic009G048100 Sobic009G048100 Sobic003G245600--Sobic009G048100 Sobic003G245600--Sobic002G289800 Sobic007G217400--Sobic001G542900 Sobic009G212300 Sobic009G212300 Sobic007G217400--Sobic009G212300 Sobic007G217400--Sobic006G079900 Sobic007G165300 Sobic007G165300 Sobic007G217400--Sobic007G165300 Sobic008G137600 Sobic008G137600 Sobic007G217400--Sobic008G137600 Sobic009G234400 Sobic009G234400 Sobic007G217400--Sobic009G234400 Sobic009G207200 Sobic009G207200 Sobic007G217400--Sobic009G207200 Sobic007G217400--Sobic002G423800 Sobic006G211800 Sobic006G211800 Sobic007G217400--Sobic006G211800
Octagon: transcription factors


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