Gene annotation
Transcriptome id Sobic.003G245600.1
Synonym WRNEXO, ATWRNEXO, WEX, Sb03g030190, ATWEX
Functional annotation 3-5 exonuclease domain-containing protein, putative, expressed
UniProt C5XFW2
Pfam PF01612
Panther DB PTHR13620
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G13870 : Werner syndrome-like exonuclease
RAP-DB (Rice) LOC_Os01g47180.1 : 3-5 exonuclease domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a038716
Brachypodium KQK09032 , KQK09038
Barley HORVU7Hr1G071770.1 , HORVU0Hr1G006750.1
Wheat TraesCS4A02G026000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G128000 receptor protein kinase, putative, expressed -
2 Sobic.004G327600 expressed protein -
3 Sobic.002G178800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
4 Sobic.004G229200 phosphate-induced protein 1 conserved region domain containing protein, expressed -
5 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
6 Sobic.009G161200 membrane associated DUF588 domain containing protein, putative, expressed -
7 Sobic.002G237000 fasciclin domain containing protein, expressed -
8 Sobic.009G048100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipase, putative, expressed -
9 Sobic.002G289800 HMG1/2, putative, expressed -
10 Sobic.001G515800 no apical meristem protein, putative, expressed -
11 Sobic.003G094600 glycosyltransferase protein, putative, expressed -
12 Sobic.001G158200 PLA IIIA/PLP7, putative, expressed -
13 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
14 Sobic.006G228000 glycine-rich protein 2, putative -
15 Sobic.001G137800 ankyrin, putative, expressed -
16 Sobic.003G204200 AP2/B3 transcription factor(PubMedID : 27016024)@B3 DNA binding domain containing protein, expressed -
17 Sobic.001G505000 cyclin-dependent kinases regulatory subunit 1, putative, expressed K02219: cyclin-dependent kinase regulatory subunit CKS1
18 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
19 Sobic.004G075900 CSLA1 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
20 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein


Gene co-expression network
sample Sobic003G245600 Sobic003G245600 Sobic002G128000 Sobic002G128000 Sobic003G245600--Sobic002G128000 Sobic004G327600 Sobic004G327600 Sobic003G245600--Sobic004G327600 Sobic002G178800 Sobic002G178800 Sobic003G245600--Sobic002G178800 Sobic004G229200 Sobic004G229200 Sobic003G245600--Sobic004G229200 Sobic001G440900 Sobic001G440900 Sobic003G245600--Sobic001G440900 Sobic009G161200 Sobic009G161200 Sobic003G245600--Sobic009G161200 Sobic002G237000 Sobic002G237000 Sobic003G245600--Sobic002G237000 Sobic009G048100 Sobic009G048100 Sobic003G245600--Sobic009G048100 Sobic002G289800 Sobic002G289800 Sobic003G245600--Sobic002G289800 Sobic003G085900 Sobic003G085900 Sobic002G128000--Sobic003G085900 Sobic010G092400 Sobic010G092400 Sobic002G128000--Sobic010G092400 Sobic002G128000--Sobic002G237000 Sobic002G128000--Sobic004G327600 Sobic004G075900 Sobic004G075900 Sobic002G128000--Sobic004G075900 Sobic001G105800 Sobic001G105800 Sobic002G128000--Sobic001G105800 Sobic002G128000--Sobic004G229200 Sobic002G128000--Sobic002G289800 Sobic002G128000--Sobic002G178800 Sobic004G327600--Sobic001G105800 Sobic004G327600--Sobic002G289800 Sobic004G327600--Sobic002G128000 Sobic004G327600--Sobic003G085900 Sobic004G327600--Sobic010G092400 Sobic001G289900 Sobic001G289900 Sobic004G327600--Sobic001G289900 Sobic004G327600--Sobic004G075900 Sobic005G062600 Sobic005G062600 Sobic004G327600--Sobic005G062600 Sobic003G444300 Sobic003G444300 Sobic004G327600--Sobic003G444300 Sobic002G078900 Sobic002G078900 Sobic002G178800--Sobic002G078900 Sobic010G048600 Sobic010G048600 Sobic002G178800--Sobic010G048600 Sobic001G459400 Sobic001G459400 Sobic002G178800--Sobic001G459400 Sobic002G178700 Sobic002G178700 Sobic002G178800--Sobic002G178700 Sobic001G459300 Sobic001G459300 Sobic002G178800--Sobic001G459300 Sobic001G106500 Sobic001G106500 Sobic002G178800--Sobic001G106500 Sobic003G092300 Sobic003G092300 Sobic002G178800--Sobic003G092300 Sobic003G006000 Sobic003G006000 Sobic002G178800--Sobic003G006000 Sobic001G456000 Sobic001G456000 Sobic002G178800--Sobic001G456000 Sobic006G081800 Sobic006G081800 Sobic004G229200--Sobic006G081800 Sobic010G246400 Sobic010G246400 Sobic004G229200--Sobic010G246400 Sobic010G269700 Sobic010G269700 Sobic004G229200--Sobic010G269700 Sobic004G229200--Sobic002G289800 Sobic003G316601 Sobic003G316601 Sobic004G229200--Sobic003G316601 Sobic001G116600 Sobic001G116600 Sobic004G229200--Sobic001G116600 Sobic010G230000 Sobic010G230000 Sobic004G229200--Sobic010G230000 Sobic004G229200--Sobic002G128000 Sobic004G229200--Sobic004G075900 Sobic002G351100 Sobic002G351100 Sobic001G440900--Sobic002G351100 Sobic001G300400 Sobic001G300400 Sobic001G440900--Sobic001G300400 Sobic010G001800 Sobic010G001800 Sobic001G440900--Sobic010G001800 Sobic001G440900--Sobic001G289900 Sobic001G440900--Sobic004G327600 Sobic001G235700 Sobic001G235700 Sobic001G440900--Sobic001G235700 Sobic001G107300 Sobic001G107300 Sobic001G440900--Sobic001G107300 Sobic001G440900--Sobic002G289800 Sobic007G153700 Sobic007G153700 Sobic001G440900--Sobic007G153700 Sobic009G161200--Sobic002G128000 Sobic007G044400 Sobic007G044400 Sobic009G161200--Sobic007G044400 Sobic001G542900 Sobic001G542900 Sobic009G161200--Sobic001G542900 Sobic003G442300 Sobic003G442300 Sobic009G161200--Sobic003G442300 Sobic008G018000 Sobic008G018000 Sobic009G161200--Sobic008G018000 Sobic009G161200--Sobic010G001800 Sobic006G079900 Sobic006G079900 Sobic009G161200--Sobic006G079900 Sobic009G161200--Sobic003G245600 Sobic007G217400 Sobic007G217400 Sobic009G161200--Sobic007G217400 Sobic006G228000 Sobic006G228000 Sobic002G237000--Sobic006G228000 Sobic001G137800 Sobic001G137800 Sobic002G237000--Sobic001G137800 Sobic001G216400 Sobic001G216400 Sobic002G237000--Sobic001G216400 Sobic009G075500 Sobic009G075500 Sobic002G237000--Sobic009G075500 Sobic007G043000 Sobic007G043000 Sobic002G237000--Sobic007G043000 Sobic001G235200 Sobic001G235200 Sobic002G237000--Sobic001G235200 Sobic003G204200 Sobic003G204200 Sobic002G237000--Sobic003G204200 Sobic004G234600 Sobic004G234600 Sobic002G237000--Sobic004G234600 Sobic002G237000--Sobic003G092300 Sobic001G158200 Sobic001G158200 Sobic009G048100--Sobic001G158200 Sobic009G048100--Sobic002G237000 Sobic009G048100--Sobic010G230000 Sobic009G048100--Sobic002G178800 Sobic003G044800 Sobic003G044800 Sobic009G048100--Sobic003G044800 Sobic009G048100--Sobic002G128000 Sobic006G031900 Sobic006G031900 Sobic009G048100--Sobic006G031900 Sobic001G157700 Sobic001G157700 Sobic009G048100--Sobic001G157700 Sobic002G239101 Sobic002G239101 Sobic009G048100--Sobic002G239101 Sobic002G289800--Sobic001G289900 Sobic007G017700 Sobic007G017700 Sobic002G289800--Sobic007G017700 Sobic002G289800--Sobic003G316601 Sobic004G237000 Sobic004G237000 Sobic002G289800--Sobic004G237000 Sobic002G289800--Sobic004G327600 Sobic007G132900 Sobic007G132900 Sobic002G289800--Sobic007G132900 Sobic010G222100 Sobic010G222100 Sobic002G289800--Sobic010G222100 Sobic002G289800--Sobic001G300400 Sobic002G289800--Sobic006G081800
Octagon: transcription factors


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