Gene annotation
Transcriptome id Sobic.002G420300.1
Synonym Sb02g043180
Functional annotation RNA-binding zinc finger protein, putative, expressed
UniProt A0A1W0W7Z7
Pfam PF00642 PF00076
Panther DB PTHR24009 PTHR24009:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G51950 : Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
RAP-DB (Rice) LOC_Os07g48410.1 : RNA-binding zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a029001 , Zm00025a053753 , Zm00025a036852 , Zm00025a033343 , Zm00025a049183 , Zm00025a002302 , Zm00025a052452 , Zm00025a027712
Brachypodium KQK21862 , KQK21863 , KQK14595 , PNT74552 , PNT65530 , PNT77483
Barley HORVU2Hr1G017490.9 , HORVU2Hr1G017490.8 , HORVU2Hr1G017490.7 , HORVU2Hr1G017490.6 , HORVU2Hr1G017490.5 , HORVU2Hr1G017490.4 , HORVU2Hr1G017490.3 , HORVU2Hr1G017490.2 , HORVU2Hr1G017490.17 , HORVU2Hr1G017490.16 , HORVU2Hr1G017490.15 , HORVU2Hr1G017490.14 , HORVU2Hr1G017490.13 , HORVU2Hr1G017490.12 , HORVU2Hr1G017490.11 , HORVU2Hr1G017490.10 , HORVU5Hr1G045860.10 , HORVU5Hr1G045860.11 , HORVU5Hr1G045860.12 , HORVU5Hr1G045860.13 , HORVU5Hr1G045860.6 , HORVU5Hr1G045860.7 , HORVU5Hr1G045860.4 , HORVU5Hr1G045860.5 , HORVU5Hr1G045860.2 , HORVU5Hr1G045860.3 , HORVU5Hr1G045860.1 , HORVU5Hr1G045860.8 , HORVU5Hr1G045860.9
Wheat TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS5B02G142300 , TraesCS5B02G142300 , TraesCS5B02G142300 , TraesCS5B02G142300 , TraesCS4A02G190800 , TraesCS2A02G102300 , TraesCS4A02G190800 , TraesCS2D02G101800 , TraesCS5D02G148600 , TraesCS5D02G148600 , TraesCS5A02G143400 , TraesCS5A02G143400 , TraesCS5A02G143400 , TraesCS2B02G119400 , TraesCS2B02G119400 , TraesCS2B02G119400 , TraesCS2B02G119400 , TraesCS4B02G124600 , TraesCS2A02G102300 , TraesCS2A02G102300 , TraesCS4B02G124600 , TraesCS2A02G102300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G105900 - -
2 Sobic.007G112900 - -
3 Sobic.001G497200 expressed protein -
4 Sobic.010G143200 - -
5 Sobic.001G201966 - -
6 Sobic.003G163100 expressed protein K08819: cyclin-dependent kinase 12/13
7 Sobic.005G063700 OsFBW2 - F-box domain and WD40 repeat containing protein, expressed -
8 Sobic.001G428000 uncharacterized TPR repeat-containing protein, putative, expressed -
9 Sobic.010G068400 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12896: splicing factor, arginine/serine-rich 7
10 Sobic.003G185250 - -
11 Sobic.006G180432 - -
12 Sobic.001G394400 controls maturity(PubMedID : 20585750)@"Regulation of the flowering time, PHYB"(PubMedID : 25961888)@far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome B, putative, expressed K12121: phytochrome B
13 Sobic.009G100050 - -
14 Sobic.003G052600 - -
15 Sobic.006G046000 - -
16 Sobic.001G303675 - -
17 Sobic.001G433200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@beta-galactosidase precursor, putative, expressed -
18 Sobic.006G072900 hydrolase, putative, expressed -
19 Sobic.006G006500 MBTB44 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
20 Sobic.001G261496 - -


Gene co-expression network
sample Sobic002G420300 Sobic002G420300 Sobic008G105900 Sobic008G105900 Sobic002G420300--Sobic008G105900 Sobic007G112900 Sobic007G112900 Sobic002G420300--Sobic007G112900 Sobic001G497200 Sobic001G497200 Sobic002G420300--Sobic001G497200 Sobic010G143200 Sobic010G143200 Sobic002G420300--Sobic010G143200 Sobic001G201966 Sobic001G201966 Sobic002G420300--Sobic001G201966 Sobic003G163100 Sobic003G163100 Sobic002G420300--Sobic003G163100 Sobic005G063700 Sobic005G063700 Sobic002G420300--Sobic005G063700 Sobic001G428000 Sobic001G428000 Sobic002G420300--Sobic001G428000 Sobic010G068400 Sobic010G068400 Sobic002G420300--Sobic010G068400 Sobic008G105900--Sobic005G063700 Sobic007G130100 Sobic007G130100 Sobic008G105900--Sobic007G130100 Sobic001G269300 Sobic001G269300 Sobic008G105900--Sobic001G269300 Sobic006G180432 Sobic006G180432 Sobic008G105900--Sobic006G180432 Sobic008G105900--Sobic002G420300 Sobic008G105900--Sobic001G497200 Sobic006G048775 Sobic006G048775 Sobic008G105900--Sobic006G048775 Sobic007G052900 Sobic007G052900 Sobic008G105900--Sobic007G052900 Sobic004G315800 Sobic004G315800 Sobic008G105900--Sobic004G315800 Sobic002G212800 Sobic002G212800 Sobic007G112900--Sobic002G212800 Sobic003G159450 Sobic003G159450 Sobic007G112900--Sobic003G159450 Sobic007G112900--Sobic010G143200 Sobic004G291800 Sobic004G291800 Sobic007G112900--Sobic004G291800 Sobic006G046000 Sobic006G046000 Sobic007G112900--Sobic006G046000 Sobic001G394400 Sobic001G394400 Sobic007G112900--Sobic001G394400 Sobic008G091671 Sobic008G091671 Sobic007G112900--Sobic008G091671 Sobic008G125600 Sobic008G125600 Sobic007G112900--Sobic008G125600 Sobic009G104300 Sobic009G104300 Sobic007G112900--Sobic009G104300 Sobic005G001800 Sobic005G001800 Sobic001G497200--Sobic005G001800 Sobic010G202000 Sobic010G202000 Sobic001G497200--Sobic010G202000 Sobic001G497200--Sobic006G180432 Sobic007G054000 Sobic007G054000 Sobic001G497200--Sobic007G054000 Sobic001G497200--Sobic007G052900 Sobic001G497200--Sobic006G046000 Sobic001G162300 Sobic001G162300 Sobic001G497200--Sobic001G162300 Sobic010G056200 Sobic010G056200 Sobic001G497200--Sobic010G056200 Sobic001G497200--Sobic006G048775 Sobic010G143200--Sobic007G112900 Sobic010G143200--Sobic003G159450 Sobic001G261496 Sobic001G261496 Sobic010G143200--Sobic001G261496 Sobic001G191100 Sobic001G191100 Sobic010G143200--Sobic001G191100 Sobic008G000900 Sobic008G000900 Sobic010G143200--Sobic008G000900 Sobic004G096500 Sobic004G096500 Sobic010G143200--Sobic004G096500 Sobic010G143200--Sobic008G125600 Sobic010G143200--Sobic008G091671 Sobic009G178800 Sobic009G178800 Sobic010G143200--Sobic009G178800 Sobic001G201966--Sobic008G105900 Sobic008G060150 Sobic008G060150 Sobic001G201966--Sobic008G060150 Sobic001G217700 Sobic001G217700 Sobic001G201966--Sobic001G217700 Sobic001G201966--Sobic002G420300 Sobic001G201966--Sobic005G063700 Sobic003G074700 Sobic003G074700 Sobic001G201966--Sobic003G074700 Sobic006G060200 Sobic006G060200 Sobic001G201966--Sobic006G060200 Sobic001G201966--Sobic007G052900 Sobic003G114100 Sobic003G114100 Sobic001G201966--Sobic003G114100 Sobic006G210100 Sobic006G210100 Sobic003G163100--Sobic006G210100 Sobic001G360900 Sobic001G360900 Sobic003G163100--Sobic001G360900 Sobic001G253200 Sobic001G253200 Sobic003G163100--Sobic001G253200 Sobic001G303675 Sobic001G303675 Sobic003G163100--Sobic001G303675 Sobic009G251300 Sobic009G251300 Sobic003G163100--Sobic009G251300 Sobic006G191400 Sobic006G191400 Sobic003G163100--Sobic006G191400 Sobic002G151600 Sobic002G151600 Sobic003G163100--Sobic002G151600 Sobic003G185250 Sobic003G185250 Sobic003G163100--Sobic003G185250 Sobic009G045700 Sobic009G045700 Sobic003G163100--Sobic009G045700 Sobic005G063700--Sobic007G052900 Sobic002G209600 Sobic002G209600 Sobic005G063700--Sobic002G209600 Sobic005G063700--Sobic001G497200 Sobic007G225800 Sobic007G225800 Sobic005G063700--Sobic007G225800 Sobic005G063700--Sobic008G105900 Sobic003G390400 Sobic003G390400 Sobic005G063700--Sobic003G390400 Sobic005G063700--Sobic006G060200 Sobic005G063700--Sobic001G269300 Sobic002G000700 Sobic002G000700 Sobic005G063700--Sobic002G000700 Sobic002G089900 Sobic002G089900 Sobic001G428000--Sobic002G089900 Sobic001G428000--Sobic003G163100 Sobic003G136800 Sobic003G136800 Sobic001G428000--Sobic003G136800 Sobic002G157200 Sobic002G157200 Sobic001G428000--Sobic002G157200 Sobic004G078100 Sobic004G078100 Sobic001G428000--Sobic004G078100 Sobic008G117200 Sobic008G117200 Sobic001G428000--Sobic008G117200 Sobic002G058300 Sobic002G058300 Sobic001G428000--Sobic002G058300 Sobic008G034600 Sobic008G034600 Sobic001G428000--Sobic008G034600 Sobic003G437500 Sobic003G437500 Sobic001G428000--Sobic003G437500 Sobic003G173950 Sobic003G173950 Sobic010G068400--Sobic003G173950 Sobic003G197800 Sobic003G197800 Sobic010G068400--Sobic003G197800 Sobic001G356500 Sobic001G356500 Sobic010G068400--Sobic001G356500 Sobic009G102500 Sobic009G102500 Sobic010G068400--Sobic009G102500 Sobic002G186000 Sobic002G186000 Sobic010G068400--Sobic002G186000 Sobic004G246700 Sobic004G246700 Sobic010G068400--Sobic004G246700 Sobic002G144933 Sobic002G144933 Sobic010G068400--Sobic002G144933 Sobic002G157000 Sobic002G157000 Sobic010G068400--Sobic002G157000 Sobic009G065100 Sobic009G065100 Sobic010G068400--Sobic009G065100
Octagon: transcription factors


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